Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0396 ATGCGACTTTACTGGGATTTTGATTTACGGCAACACTTGCTCAGGCTTGCTGCTGATGGACAAGAACTTTTTACCTTCTATGATGAGGTTTATGATACTTTTGATGCGATGGGATTACATGAAAATCTTCTGAGGGGCATCTATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAACAGAGGGTAATTGTTCCCTTTTGCAAGGGTCTTGATGTCATTCAACAGGCCGAGTCTGGAACTGGGGGCGCAAGTGTTCGTGAAGATCAGCGCATTCTCCAAGCTGGTGTTCATGTTGTTGTTGGAACTCCCGGTCATGTGTATGACATGCTGCGGAGGCAGTCTCTTCGTCCAGATTACATAAAGATATTTGTTCTGGATGAGGCTGATGAAATGCTTTCTCAAGGTTTCAAGGACAAGTTAGCATTGCAGATGTATGACATCTTCCAGTTGCTGCCCTGTAAAATTCAGCAATTTTATGTCAATGTTGATAAGGAGGTGTGGAAGCTAGAGACTGATCTTTATGAAACACTGGCAATCACCCAGTGTCATTTTTGTCAACACGAGGCGCAAGGTGGACTGGCTCACTGA 588 0.4439 MRLYWDFDLRQHLLRLAADGQELFTFYDEVYDTFDAMGLHENLLRGIYAYGFERPSAIQQRVIVPFCKGLDVIQQAESGTGGASVREDQRILQAGVHVVVGTPGHVYDMLRRQSLRPDYIKIFVLDEADEMLSQGFKDKLALQMYDIFQLLPCKIQQFYVNVDKEVWKLETDLYETLAITQCHFCQHEAQGGLAH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0396 195 PANTHER RNA HELICASE 80 158 - -
Lele43g0396 195 Gene3D - 82 175 IPR027417 -
Lele43g0396 195 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 124 132 IPR000629 -
Lele43g0396 195 Gene3D - 24 81 IPR027417 -
Lele43g0396 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 147 IPR027417 -
Lele43g0396 195 Pfam DEAD/DEAH box helicase 66 147 IPR011545 GO:0003676|GO:0005524
Lele43g0396 195 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 32 60 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0396 Lele-ChrLele43 3538519 3539901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0396 7 181 Eukaryotic Initiation Factors Gene Family AT3G13920 49.635 1.10e-67 211