Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0394 ATGGGAAATCAGAAGCAGAAATGGACGGCGGAGGAAGAAGAAGCATTACTCGCCGGAATAGCGAAGCACGGTCCCGGCAAGTGGAAGAACATTCTCAAGGATCCCGAGTTTGCGCCTTTCCTCACTTCCCGTTCCAACATTGACCTCAAGGATAAATGGAGGAACTTAAGTGTTAATACTGCTGCTCAAGGTTCTAAAGATAAAGCAAGGAATCCAAAGATCAAAGCTCTTATGCCTGCTCCAGCTGCTAACGTTCAAAAGGCTACTCCTGCTGCTCCAGTTCGTCAAAGTGCAGCTTCTGATACTGCCAGCGATGATGCTACTCAAAAAGCTCAGGATGTGAAGAATGCTCCTCGGTATAACGGAATGGTTTTTGAAGCCCTATCAACAATAAAAGATACTAATGGTTCTGACATAAATACCATTGTTAGTTTCATTGAGAAAAGGCATGAGGTACCTCCAAATTTCAGAAGAGCATTAAGTACGAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAGAAGGTACAAAATTGTTACAAGATAAAAAAGGACAGCCCTTCCGGGGCAAAAACACTTCCAATGAAACAAAAGGACATCTGGCAACATCAACCACTAGCCTCTAGTTTAGTGCCGCCTTATGAGAGTGCTAAGGATGCTGCTGATACTGCAGCCTACAGACTTGCAGAAGCCGAGAACAAATCATTTCTGGCTGCTGAGGCAGTCAAGGAAGCAGAGAGACTCGCAAAATTTGCCGAAGAGGCTGATGCAGTATTACAACTAGTGAAAGAGATTTATGAACAATGTACTGATAAACAGTTCTATCTACATGCTCGCATGGTGAAACTATTGTCTTGGCTTAAAGTTGGTGAAATACAAGCATTTAAATATACAAGTTTTGTCATCCTTAACCATGCTATACTTGAGAATGGCAGCTATAAAAGTGAATCTTGCACTGTTGTTGAACACATGGCAAATTATGACATTGACAAAAGTCTTGCAGTAAAATGCATGTATTTAATGTCCTCCTGCATGAGGGGCAATACATGA 1050 0.4238 MGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPEFAPFLTSRSNIDLKDKWRNLSVNTAAQGSKDKARNPKIKALMPAPAANVQKATPAAPVRQSAASDTASDDATQKAQDVKNAPRYNGMVFEALSTIKDTNGSDINTIVSFIEKRHEVPPNFRRALSTRLRRLVAQGKLEKVQNCYKIKKDSPSGAKTLPMKQKDIWQHQPLASSLVPPYESAKDAADTAAYRLAEAENKSFLAAEAVKEAERLAKFAEEADAVLQLVKEIYEQCTDKQFYLHARMVKLLSWLKVGEIQAFKYTSFVILNHAILENGSYKSESCTVVEHMANYDIDKSLAVKCMYLMSSCMRGNT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0394 349 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lele43g0394 349 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lele43g0394 349 FunFam Telomere repeat-binding factor 1 2 58 - -
Lele43g0394 349 Gene3D - 112 200 IPR036388 -
Lele43g0394 349 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lele43g0394 349 Pfam linker histone H1 and H5 family 118 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele43g0394 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lele43g0394 349 PANTHER SINGLE MYB HISTONE 4 1 273 IPR044597 GO:0003691
Lele43g0394 349 Gene3D - 2 58 - -
Lele43g0394 349 Coils Coil 214 234 - -
Lele43g0394 349 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele43g0394 349 MobiDBLite consensus disorder prediction 81 114 - -
Lele43g0394 349 MobiDBLite consensus disorder prediction 90 114 - -
Lele43g0394 349 SMART sant 4 59 IPR001005 -
Lele43g0394 349 SUPERFAMILY "Winged helix" DNA-binding domain 116 192 IPR036390 -
Lele43g0394 349 CDD SANT_TRF 6 56 - -
Lele43g0394 349 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele43g0394 349 FunFam Telomere repeat-binding factor 1 8 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0394 Lele-ChrLele43 3518326 3522403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0394 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 52.027 4.68e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele43g0394 Linker_histone 7.9e-10 CL0123