Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0385 ATGGCGTCGTCTTCACTGTTCCAGTCTTCTCCCTTCTCCTTCCATTGCAAACCCTCTCTCCCACATCCAACACCCAAATCCAACTTCATAGTCAACGCTCACTTCCAAAATGGATCCTCCAAACCTCTCTCTCACAACAACAACAACAACAACAACGCCTCGCCAGTCCCACCGGCGGTTTCAAAGAACCGCCGCCCTGCCGATGAGAACATCCGCGATGAGGCTCGCCGCGAATCTGTCACTTACGCACATCGATTCTTCGCCAAGTACGTCCCCTTTAATGCCGATCCTTCATCCACAGAATCCTACTCTCTCGACGAGATCGTGTATCGGTCCCAATCTGGTGGGCTTCTCGATGTTCAGCACGACATGGAAGCTCTGAAGAAATACGATGGTCAGTACTGGCGATCCCTGTTTGACTCTCGTGTGGGTAGAACCACCTGGCCGTACGGCTCCGGTGTTTGGAGCAAGAAGGAATGGGTGTTACCCGAGATCGACAGTGACGACATCGTGAGTGCATTCGAAGGAAACTCGAATCTCTTCTGGGCTGAGCGTTTTGGCAAGCAGTTTCTGGGCATGAACGATTTGTGGGTCAAACACTGTGGGATCAGCCACACTGGCAGTTTCAAAGATCTCGGTATGACTGTTTTGGTGAGCCAAGTTAACAGGTTAAGAAAAATGAAACGTCCTGTTGTAGGTGTTGGTTGTGCTTCCACAGGGGACACTTCTGCTGCTTTATCTGCTTATTGTGCTTCTGCAGGAATCCCATCAATTGTGTTTTTGCCTGCAAATAGGATTTCCATTGCTCAACTGGTCCAGCCAATTGCAAATGGTGCGTTTGTGTTGAGCCTTGATACAGATTTTGATGGGTGCATGCATTTGATAAGGGAAGTTACTTCTGAATTACCTATATACTTGGCTAATTCTCTGAACAGCTTGAGATTAGAAGGGCAGAAAACTGCAGCTATTGAGATTTTGCAGCAGTTTAATTGGCAAGTACCTGATTGGGTTATAGTGCCAGGAGGGAATCTTGGAAACATCTATGCATTCTATAAAGGGTTTCACATGTGCAAAGAGTTAGGACTAGTTGATAGGATTCCTAGGCTTGTTTGTGCTCAAGCTGCAAATGCTAATCCTCTCTATCAGTACTTCAGGTCAGGGTGGAAAGAATTTAAGTCTGTAAAGGCCAACACTACATTTGCATCTGCCATACAAATTGGTGATCCTGTTTCAATAGATAGAGCTGTTTATGCACTGAAGAACTCCAATGGCATTGTTGAGGAAGCAACAGAAGAAGAACTAATGGATGCTACGGCTCAAGCAGATTCTACTGGTATGTTTATATGTCCTCATACTGGTGTTGCTTTGACCTCATTGATTAAATTAAGGAAAAGGGGGATCATAGGGCCAACAGATAGGACTGTGGTAGTAAGTACTGCTCATGGGTTGAAGTTTACACAATCGAAAATTGATTACCATTCAAAAAATATTGACGGCATGGCTTGCAAATTTGCTAACCCGCCAGTGCAAGTGAAGGCGGATTTTGGGTCAGTTATGGATGTTTTGAAGAAGTATTTGCTCATGTTCACAAGCTGCTCTATATTGGAGCTTCTGCTTATTAGTGATTCATCTCTGTTGAGCATTTGTGGTGATGGTTTTATTACAAGAGTTTGCTTAAATCTCAACGGTATAAAACCCTTATCTGCAAATCATAATATTCATAAGGAGATTGGGAAAAATGAAAAAGAAAAAGAATTAGATGGGCGAAGTCAAATAGGCCGTGGATCATCTCGTAAAGAACTGAAGCATCATTATCCATATAATGTTGATGTTGCCCATAAAGAAGCCGTCCCTCCATCGGGAGAAGAAATGCATCAACTTTTTCTCCCTATCGAGGATTCTGTGCTCGAAAAGGGGCTTCCTAGTGTACCAGATTCTGAAGAAGAAAGCAGTTTTCAATCAAATGATAAGTTCCACGAAAACCAAGTATCCGAGAACTCAGACAGCTGCAGGAGCCTATCTTCAAAAAGCTCAGTAATGGAGCTTGAACAGATTAGGGAAGAAGAAGGACGCAACCTAGAAAGAGCTAGGCTCGCTGAAGAGGCTGCATTGGCTTTGACAGAGGCAGCAAGAGAGAAAACCATGGCTGCATTGGAGTCAACGCAAATGGCAAAACTCCTAGCAGAAATGGAGACCGAGAAGAGAAAGCAGGCAGAAACGAAAGCTATGCATGAGGAAGAGAAGATGAAAGCAGTAAATGCACTTGTTGAAGTTTTGAGCACCGTAAGACATCCTAACATGGTTATCCTCCTAGCAGAAATTGCCACCGGCCTTCACTTCCTTTGCCAAAAAAGGCCTGAACCACTGGTGCATCCAGATCTCAAGCCTGCAAATATACTCTTAGACAAGAACTACAAGAGCAAGATCAGTGATGTGGGTTTGGCCAGGCTTGTTCCTCCACCTGTAGCTGACAAAACCACTCAATATCGCATGACAGCCGCAGCAGGAACATTCTGCTATATTGACCCAGAGTATCATCAAACAGGAATGTTGGGTGTAAAATCAGACATATATTCCTTAGGTGTAATGCTGATTCAGATTCTTACAGCAAAGCCTCCTATGGGTTTGTCTCACCTGGTTGAAAAGGCTATCCAAACGGGCAAATTTCCAGAGGTGCTTGATCCAAGTGTGACACATTGGCCTGTTGAAGAGGCTTCATCACTTGCTATGTTGGCTTTGAAATGTTGTGAATTGAGGAAACGAGACAGATCAAATCTTGGTTCAGTCATTTTGCCGGAGCTGGATCGGCTCAAAGATTTAGAAGAAGACAGATATGTGAAAGAAGACACTGACAGCAATAACAGATTTGAGAAACGGAATCAAGAGGCAATGAGTAGCAATAGCAATCATAATGTGGAAATGGAGAGAAGGCAGAGGAAACCCATGAAGTCTCTGAGCAACAAAAGCAGTAGCAGAAGTAGAGTAGGAGAAGAAGGCCACTTTCCAGCATCAAGAAAACATGTTGAGGAAGTTCCAAACAAGCAATATAGTGATGAGATAGGAAGTTGCTGGTCTTTTGGAAGTTGCTCCACCATTCGCCCACATTCCTCATAA 3114 0.4412 MASSSLFQSSPFSFHCKPSLPHPTPKSNFIVNAHFQNGSSKPLSHNNNNNNNASPVPPAVSKNRRPADENIRDEARRESVTYAHRFFAKYVPFNADPSSTESYSLDEIVYRSQSGGLLDVQHDMEALKKYDGQYWRSLFDSRVGRTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANRISIAQLVQPIANGAFVLSLDTDFDGCMHLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFNWQVPDWVIVPGGNLGNIYAFYKGFHMCKELGLVDRIPRLVCAQAANANPLYQYFRSGWKEFKSVKANTTFASAIQIGDPVSIDRAVYALKNSNGIVEEATEEELMDATAQADSTGMFICPHTGVALTSLIKLRKRGIIGPTDRTVVVSTAHGLKFTQSKIDYHSKNIDGMACKFANPPVQVKADFGSVMDVLKKYLLMFTSCSILELLLISDSSLLSICGDGFITRVCLNLNGIKPLSANHNIHKEIGKNEKEKELDGRSQIGRGSSRKELKHHYPYNVDVAHKEAVPPSGEEMHQLFLPIEDSVLEKGLPSVPDSEEESSFQSNDKFHENQVSENSDSCRSLSSKSSVMELEQIREEEGRNLERARLAEEAALALTEAAREKTMAALESTQMAKLLAEMETEKRKQAETKAMHEEEKMKAVNALVEVLSTVRHPNMVILLAEIATGLHFLCQKRPEPLVHPDLKPANILLDKNYKSKISDVGLARLVPPPVADKTTQYRMTAAAGTFCYIDPEYHQTGMLGVKSDIYSLGVMLIQILTAKPPMGLSHLVEKAIQTGKFPEVLDPSVTHWPVEEASSLAMLALKCCELRKRDRSNLGSVILPELDRLKDLEEDRYVKEDTDSNNRFEKRNQEAMSSNSNHNVEMERRQRKPMKSLSNKSSSRSRVGEEGHFPASRKHVEEVPNKQYSDEIGSCWSFGSCSTIRPHSS 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0385 1037 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 67 525 IPR036052 -
Lele43g0385 1037 Pfam Pyridoxal-phosphate dependent enzyme 173 479 IPR001926 -
Lele43g0385 1037 TIGRFAM thrC: threonine synthase 160 484 IPR004450 -
Lele43g0385 1037 ProSiteProfiles Protein kinase domain profile. 652 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g0385 1037 Gene3D Transferase(Phosphotransferase) domain 1 755 964 - -
Lele43g0385 1037 SUPERFAMILY Protein kinase-like (PK-like) 766 960 IPR011009 -
Lele43g0385 1037 CDD Thr-synth_1 155 485 - -
Lele43g0385 1037 Gene3D - 65 287 IPR036052 -
Lele43g0385 1037 SMART serkin_6 693 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g0385 1037 MobiDBLite consensus disorder prediction 36 58 - -
Lele43g0385 1037 Gene3D - 290 526 IPR036052 -
Lele43g0385 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Lele43g0385 1037 MobiDBLite consensus disorder prediction 945 1037 - -
Lele43g0385 1037 MobiDBLite consensus disorder prediction 638 685 - -
Lele43g0385 1037 FunFam Threonine synthase 1, chloroplastic 270 530 - -
Lele43g0385 1037 MobiDBLite consensus disorder prediction 656 680 - -
Lele43g0385 1037 MobiDBLite consensus disorder prediction 993 1014 - -
Lele43g0385 1037 Coils Coil 727 755 - -
Lele43g0385 1037 MobiDBLite consensus disorder prediction 1018 1037 - -
Lele43g0385 1037 Pfam Protein kinase domain 752 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g0385 1037 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 200 214 IPR000634 GO:0006520|GO:0030170
Lele43g0385 1037 PANTHER OS02G0152300 PROTEIN 772 988 - -
Lele43g0385 1037 Coils Coil 679 699 - -
Lele43g0385 1037 MobiDBLite consensus disorder prediction 36 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0385 Lele-ChrLele43 3436486 3446202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0385 756 943 Receptor kinase-like Gene Family AT5G35380 58.079 2.72e-75 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lele43g0385 PALP 7.9e-48 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1012 41 19441731 19443323 Lele43g0385 43 3436486 3446202 hybridization
Lele42g0980 42 22442182 22443777 Lele43g0385 43 3436486 3446202 hybridization