Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0383 ATGAAATTTTGTGTGCATTCGTTTAAGCGGAGACATTCATTGCATCGCCTTCGTCATTCTAAGTGCACTGTCGGAGATAGGGAGGAGAGTGAGACAGAGAGAGGGAGGGACGAAGCCATGGACGGTGGAGCACAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGAAGAAGAGCTGGACTCGTAAAAGCCCTTACCACCGATGTTGAAGAATTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGTTATCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAACTTCCAGAGCCTGTGCTGGGTATAAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTCCACAGTGATGCATGGCTACTTGCTATCGCTTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATTAATGAACTACCAACGATATTTGAAGTTGTTACGGGTACAGCGAAGAAACAAGTTAAGGAGAAGTCTTCAGGTTCAAATCACAGTGGCAGTAAATCAAAGTCCAACTCTAAAGCGCGAGGTTCAGAATCTGTGGGGAAGCATTCAAAGGCTATTCAATCAAGAGACGAGGAAGAAGGACTGGATGAAGTAGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAATTCTGGATTTGTTGTGACATCTGCGAAAAATGGTTCCATGGAAAATGTGTGAAGATCACCCCAGCTAGGGCAGAGCATATCAAACAATACAAATGCCCATCATGCAGTAACAAGAGAGCTCGTCCCTGA 879 0.4437 MKFCVHSFKRRHSLHRLRHSKCTVGDREESETERGRDEAMDGGAQYNPRTVEEVFRDFKGRRAGLVKALTTDVEEFYNQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKQVKEKSSGSNHSGSKSKSNSKARGSESVGKHSKAIQSRDEEEGLDEVDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0383 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 287 IPR013083 -
Lele43g0383 292 FunFam PHD finger alfin-like protein 231 287 - -
Lele43g0383 292 MobiDBLite consensus disorder prediction 184 205 - -
Lele43g0383 292 MobiDBLite consensus disorder prediction 21 40 - -
Lele43g0383 292 SMART PHD_3 238 286 IPR001965 -
Lele43g0383 292 MobiDBLite consensus disorder prediction 21 45 - -
Lele43g0383 292 SUPERFAMILY FYVE/PHD zinc finger 230 289 IPR011011 -
Lele43g0383 292 CDD PHD_AL_plant 238 288 IPR044104 -
Lele43g0383 292 Pfam Alfin 50 178 IPR021998 GO:0006355|GO:0042393
Lele43g0383 292 MobiDBLite consensus disorder prediction 206 222 - -
Lele43g0383 292 Pfam PHD-finger 239 288 IPR019787 -
Lele43g0383 292 ProSitePatterns Zinc finger PHD-type signature. 239 285 IPR019786 -
Lele43g0383 292 PANTHER CPG BINDING PROTEIN 47 291 IPR045104 GO:0006355|GO:0042393
Lele43g0383 292 MobiDBLite consensus disorder prediction 184 231 - -
Lele43g0383 292 ProSiteProfiles Zinc finger PHD-type profile. 236 288 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0383 Lele-ChrLele43 3423954 3428820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0383 40 291 Alfin-like Transcription Factor Family AT3G42790 77.075 4.97e-129 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele43g0383 Alfin 2.8e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1014 41 19450944 19455090 Lele43g0383 43 3423954 3428820 hybridization
Lele42g0982 42 22451120 22456147 Lele43g0383 43 3423954 3428820 hybridization