Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0382 ATGAAATCATCTGCCTCCAAGGGTTTAAGCTTGAAAATGGGATTTCTGCCACAAAAATGTCATAATACCAAGCCATTGAGTTTCCAGTTTCAAGATCAGGATTCATCTTCTACTCAATCAACTGATCAATCTTGTCCAGAAGTTGGTTCAGCTCAATCAGGTCAAATTTCTATCCAGTGTAGCAATTCTTCTGCGCATTCAAAATGTAGTGCAAGTGGAGGGGGTCTCATCCTGTCATCATTGGGGAGTCAGAGCCTTTGTTTTCCTCCTTTCCAAGTGGATCATAACCAATCAATTGCTCATATTGCATTTTGCCATGCTGAACCATGCTTTGATGGTGTTCTTGCTGCATATGCGCCACAGTCTAAGATTCATCAGGCCCAACTCATGGGATTAACTTCTGTTCGAGTTCCTCTTCCTTTTGATCTGACAGAAGAACCGATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGCGCCAAACTCGAAGCTCAGAACAGACTCATCAAAGCTCGGAAACCATATCTTCACGAGTCCCGCCATCGGCATGCATTAAGGAGGGCTAGAGGTTCTGGTGGTCGCTTTCTCAACAGCAAACAACTCCAGGAAGCAAGCCTCAAAACAGACAGTCATGGCCTGAAAGTTTGGGAACGTACTAGGTTGAACCTAGGTGGAGGAAATATGTCAGAATTCGAAAATCACGCTGATGTAGAAAACTATAGAGATGGCTCTGTTATCACAAGTCCATCCAATAGTGATGGCATGTCCCAGCAACATGAGTCCAGCTTCAGGCTCTCTAGTTACCCTCCTCACATTGGATGGAACATGCAAGGCTACTCAGCCGATCCCGGCGGCACACGTGGTGGTGGTGGGAATCAACAGCATGTGTCTGTTCTCATGTGA 921 0.4539 MKSSASKGLSLKMGFLPQKCHNTKPLSFQFQDQDSSSTQSTDQSCPEVGSAQSGQISIQCSNSSAHSKCSASGGGLILSSLGSQSLCFPPFQVDHNQSIAHIAFCHAEPCFDGVLAAYAPQSKIHQAQLMGLTSVRVPLPFDLTEEPIYVNAKQYHAILRRRQYRAKLEAQNRLIKARKPYLHESRHRHALRRARGSGGRFLNSKQLQEASLKTDSHGLKVWERTRLNLGGGNMSEFENHADVENYRDGSVITSPSNSDGMSQQHESSFRLSSYPPHIGWNMQGYSADPGGTRGGGGNQQHVSVLM 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0382 306 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 21 267 IPR001289 GO:0003700|GO:0006355
Lele43g0382 306 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 146 201 IPR001289 GO:0003700|GO:0006355
Lele43g0382 306 MobiDBLite consensus disorder prediction 248 306 - -
Lele43g0382 306 PRINTS CCAAT-binding transcription factor subunit B signature 178 201 IPR001289 GO:0003700|GO:0006355
Lele43g0382 306 PRINTS CCAAT-binding transcription factor subunit B signature 147 169 IPR001289 GO:0003700|GO:0006355
Lele43g0382 306 ProSiteProfiles NF-YA/HAP2 family profile. 144 204 IPR001289 GO:0003700|GO:0006355
Lele43g0382 306 MobiDBLite consensus disorder prediction 249 271 - -
Lele43g0382 306 Gene3D - 144 205 - -
Lele43g0382 306 SMART cbf3 143 204 IPR001289 GO:0003700|GO:0006355
Lele43g0382 306 ProSitePatterns NF-YA/HAP2 subunit signature. 149 169 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0382 Lele-ChrLele43 3420698 3423568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0382 5 304 CCAAT-HAP2 Transcription Factor Family AT1G17590 41.748 2.19e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele43g0382 CBFB_NFYA 4e-26 No_clan