Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0380 ATGGCCTCAAATGCCAACAGACTGGCAAGTACAGGTTTGGCGACTGGCAATATGGTTGATGATCTTTCACATGATCGACTAGTATATGTTACAACATGTCTCATTGGGCAGCAGGTGGAAGTGCATGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATACTGAGAAAGATTTTGGAATCATTTTAAAGATGGCTCGTTTGATAAAGGATGGTTCGTTGCGAGGGCAGAAGTCTGGTGTAGAATCAGTCAGCAAGTCTCATTCAAAGACTTTAATTATACCTGGCAAAGAATTTGTACAAGTCATAGCAAAGGGCGTTGCTGTTACTAGGGATGGCTTACCTAGTGAAGCTCACCATGAAATGTACCAGGACATCATTGTTGATTCAGTAATATCACAATCACGTCATACTGACTCAGAGAGAGAACTAAAACCATGGGTGCCTGATGAAGATGATCCACAAGGCCCTGAACTGGAAAATATCTTTGATGAAACTTGGAAGAGGGGCTGGGATCAATTTGAAACAAACAAAATGTTGTTTGGTGTAAAAAGCACGTTCAATGAGGAACTTTATACCACAAAGCTAGAGAAAGGCCCTCAGACAAGAGAGTTGGAGAAGCAAGCTTTAAGAATTGCAAGAGAAATCGAGGGTGAGGATACCCAAGATCTTCATCTGGCAGAGGAAAGAGGCCTTTATCTTCATAAGAATTTTGATATTGATGAAGAGACTAGATTCTCTTCAGTCTATAGGGATAAAGTGGTTGATGACAGTGGCTATGATGAGAATGAGGATATTCTGTTGGATTCATGCAATTCTGAAACCTTTGGAGATACATTCGCTTCAATTGTTATGAGATCTGGTGAATCAGGTGATGGGAAAGATGATGATGGAGTTAGAACTTTATCAAATTCATCCTCTAAGGATTTACCAAAATCATCTCAGTCAAATAATGGTGTGGATTTAGGCCGTGCTGGTTCTCACAATCTTGCTAATCAGTTAGCATCTGAACTCCCTGCAAAAAGTGACCCTACTTCGGATGCTGAATGCAGGGTTCAGGGGAACTCACTTAGTGATCTGCATGGAGCCATTGACAGTAGCAAGGAAGAAAATCGGATAGAATCTGGGGATGTACAACCGTCAAAATCCAAGGACTTACTGTTATCACACAACTTGAAGAAAGATGACCCCAATACTGGGGCATTGCCTTCAAATGCCACGTCTCATGCCCCTTCATCTCATATTTCAATAAAGGCTCCTGGAAAGACAGATTGTGTGAAAGGTGTTGAAGCATCTTCTGGTCCTGGGCTATCACCAAGTTCTTCAGTTGGTTCATTGTCTTCTGAAAAATCAGCATTGAATCCAAACGCAAAGGAATTCAAGCTCAATCCAAATGCAAAGAGTTTTGTTCCATCCCAATCACCAGTTAGGCCTCCCTCACAGGTGTCTGATGGCTCCTTCTATTACCCATCTAATGTAACTACTGTACCACAGATGACTGCCATGCCCATGGAACTTGGAATGGGACATGCATTTGCTGGGCAGCAACCTGTCCTGTATAATCCACAGGTAGCACAAATGTCATCACAAGCATATTTCCATCCAAATGGACCACAGTACGGACAGATTCTTGGTCATCCTAGGCAAGTTTTGTACGTGCCAGGTTATTTACCTCAGGAAACACCATACAAGGGACGGGAATACTAA 1716 0.419 MASNANRLASTGLATGNMVDDLSHDRLVYVTTCLIGQQVEVHVKNGSIYSGIFHATNTEKDFGIILKMARLIKDGSLRGQKSGVESVSKSHSKTLIIPGKEFVQVIAKGVAVTRDGLPSEAHHEMYQDIIVDSVISQSRHTDSERELKPWVPDEDDPQGPELENIFDETWKRGWDQFETNKMLFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEDTQDLHLAEERGLYLHKNFDIDEETRFSSVYRDKVVDDSGYDENEDILLDSCNSETFGDTFASIVMRSGESGDGKDDDGVRTLSNSSSKDLPKSSQSNNGVDLGRAGSHNLANQLASELPAKSDPTSDAECRVQGNSLSDLHGAIDSSKEENRIESGDVQPSKSKDLLLSHNLKKDDPNTGALPSNATSHAPSSHISIKAPGKTDCVKGVEASSGPGLSPSSSVGSLSSEKSALNPNAKEFKLNPNAKSFVPSQSPVRPPSQVSDGSFYYPSNVTTVPQMTAMPMELGMGHAFAGQQPVLYNPQVAQMSSQAYFHPNGPQYGQILGHPRQVLYVPGYLPQETPYKGREY 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0380 571 PANTHER ATAXIN 2-RELATED 16 561 IPR045117 GO:0003723
Lele43g0380 571 MobiDBLite consensus disorder prediction 401 417 - -
Lele43g0380 571 MobiDBLite consensus disorder prediction 361 487 - -
Lele43g0380 571 Pfam Ataxin 2 SM domain 24 108 IPR025852 -
Lele43g0380 571 MobiDBLite consensus disorder prediction 437 457 - -
Lele43g0380 571 MobiDBLite consensus disorder prediction 306 329 - -
Lele43g0380 571 MobiDBLite consensus disorder prediction 366 382 - -
Lele43g0380 571 Pfam LsmAD domain 184 254 IPR009604 -
Lele43g0380 571 Gene3D - 31 106 - -
Lele43g0380 571 MobiDBLite consensus disorder prediction 469 487 - -
Lele43g0380 571 SMART LsmAD_2 184 255 IPR009604 -
Lele43g0380 571 MobiDBLite consensus disorder prediction 290 329 - -
Lele43g0380 571 MobiDBLite consensus disorder prediction 140 160 - -
Lele43g0380 571 FunFam Polyadenylate-binding protein-interacting protein 3 28 101 - -
Lele43g0380 571 MobiDBLite consensus disorder prediction 140 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0380 Lele-ChrLele43 3411492 3417267 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1016 41 19462932 19470163 Lele43g0380 43 3411492 3417267 hybridization
Lele42g0984 42 22462632 22468743 Lele43g0380 43 3411492 3417267 hybridization