Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0366 ATGTCCTCTCACGAACAAGCCCTAGTGTCCCTTTTTTCCCAGCTAGCCTTGTCCTTCGACGGCGCTATTTTGGGTCTCGCCTTGGCCTATGCCGCTGTCCGGTCCGTCCTCAAACTTACTGCTAACTCTGCAGCGCTCGACAAGCTCCGCGTCGCCCCTACTCTCTCTGTTTCTGACCTCCGTTCACTTCTGGACAGTTCCGACGCCGACGGCAATTCACAAGATTGCAACAAACTAGTTATTGTCCGTGGCACTGTCGAGGCTAAGTCTGCCGTTGATAGCGGCTGGAAAAGCTTAAGACCTAGTGTATTAGTTTCTCGCGAGTCTGGCGATAACGCTGTGGCTATTCAGAGAACTCAAACGTGTATATACACTGAATGGAAGGGCTTCTTTGGTTGGACTTCTGATCTTCGAGCCTTATTTGCTCGAAATTGGAGGCAGCAAGGGTCTTCATCTTTAAGAACGGTGCCCTTTGTTCTCATGGATGGTGGATGGCGACCTCATGCTGATTATGTTGTTGTCAACTTGGAAGGCTCAAGACATCCCTTACCTCTTACTACAGTTTATCATAAATTGCAACCCATAAATGCTTCTCCATACACATTCTTGCAGGCACTTTTTGGACATGAGTATCCAGTTGGGCTACTGGATGAAGAGAAAATTCTTCCTTTGGGAAAGGATATCAATGCTGTTGGCATATGCTATTTTAAAAATGGAATTGCTGAAATTAAGTCATGCAAAGAGTTGCCTTATTTTCTGTCTGAATTGAACAAAGATCAGATGATTGTGGATCTTACATTTAAAACAAAGGTACTTTTTTGGAGTGGTATCATTCTGGGTTCAGTGTCAGTTGGCATTCTTGGTTATGCTTTTGTGAGAAACTGGAACAAGTGGAAACAGTGGAGGCAACAGAGGCAGGTTCAGCGGCAAGGTCAAGCCAACTATGATAATGCTGCTGAATTCGAGATTTTAGACAATGAGATAGAAGATGTTCAAGATGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTGTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCGATATCCGTTGAACGCGAAGTGGCACCTAAGTGTCCCGTTTGTCGGCAGGAAATTCGCAATTCAGTGCGGATATTCGAATCGTGA 1170 0.4547 MSSHEQALVSLFSQLALSFDGAILGLALAYAAVRSVLKLTANSAALDKLRVAPTLSVSDLRSLLDSSDADGNSQDCNKLVIVRGTVEAKSAVDSGWKSLRPSVLVSRESGDNAVAIQRTQTCIYTEWKGFFGWTSDLRALFARNWRQQGSSSLRTVPFVLMDGGWRPHADYVVVNLEGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDINAVGICYFKNGIAEIKSCKELPYFLSELNKDQMIVDLTFKTKVLFWSGIILGSVSVGILGYAFVRNWNKWKQWRQQRQVQRQGQANYDNAAEFEILDNEIEDVQDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRNSVRIFES 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0366 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 389 IPR013083 -
Lele43g0366 389 SMART ring_2 337 376 IPR001841 -
Lele43g0366 389 Pfam E3 Ubiquitin ligase 140 286 IPR022170 GO:0004842|GO:0006996|GO:0016567
Lele43g0366 389 SUPERFAMILY RING/U-box 329 383 - -
Lele43g0366 389 Pfam Zinc finger, C3HC4 type (RING finger) 335 382 - -
Lele43g0366 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 389 IPR044247 GO:0004842
Lele43g0366 389 ProSiteProfiles Zinc finger RING-type profile. 337 377 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0366 Lele-ChrLele43 3305064 3308587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0366 328 386 C3H Transcription Factor Family AT3G06140 35.593 1.97e-06 47.4