Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele43g0307 | ATGCAGGGAGGAGGATCGTCAGGTTCTTCTGACGGTAATATCTTCGTTGACGAATTCTACTTCTCGGCTCTTTTTGATGAAGATGACATCTTTCCAATCTCTGATGAGAGATATGCAGAACAGATACAACTGCAAGAGGCCCTCATGTCCTCAGTTATCATGTCCAGGACAATGAGATACGATGATGAGATAAACGTTATTAATAATGTGGAAGATTCTTCAAGAAAGGGGAAGATGAAGTTAGAGACTGGTGAATCTTCTGGAAGCTCCATCATCCCTAACATCACGAGCTTCTGTCAGATTTGCATGGAAGACAAACCGATGGAGAACATGTTCAGAGACAACAAAAGCTGCGAACATGTTTTCTGTTCAGGCTGCATTTCATCCTACGTGGCGTCGAAGCTTCAAGAGAACATATCAATGGTGAAATGCCCTGACCCAAAATGCCGAGGCATTGTAGAGCCACTCTTTTGTCGATCCATCATCCCAGAGGAGTTATTTGAGAGATGGGAAAATGCAGTGTGCGAGAACCTGATTCTTGGGTCCCAGAAATTCTACTGTCCCTTCAAGGATTGCTCGGCCATGTTAGTGGACGAAGGAGAAGAGGTGGTGACATCCTCGGAGTGTCCGAACTGCAGGAGGCTGTTCTGTGCTCAGTGCAAGGTGGCGTGGCACGCTGGGATGGATTGCACAGCGTTTCATCAGAGTCAGAAAATGGATCAGATACAGAACGATGATCTGCTGAAGGAACTGGCAAAGAATAAGAGATGGAGGAGATGCCCTCGATGCAGATTTTTTGTGGAAAAGATTGATGGGTGCTCTCATATTTCCTGCAGGTTTGAATCTATCATTCTGAATATGTGTGCGGTAACCAGTTTTGTTATGGATGCGGATCTGATTGGAATGAGCATCATTGGTGTCGTTTATAGGATTATGCCAAAATGTGACTTTGTGATTCCCGATGCCAAATATTTGACTTCGATCTTTGGCTTTGTGATTCCCGATGCCAAATATTTGACTTCGATCCCCTACGCAGTTTAG | 1041 | 0.4467 | MQGGGSSGSSDGNIFVDEFYFSALFDEDDIFPISDERYAEQIQLQEALMSSVIMSRTMRYDDEINVINNVEDSSRKGKMKLETGESSGSSIIPNITSFCQICMEDKPMENMFRDNKSCEHVFCSGCISSYVASKLQENISMVKCPDPKCRGIVEPLFCRSIIPEELFERWENAVCENLILGSQKFYCPFKDCSAMLVDEGEEVVTSSECPNCRRLFCAQCKVAWHAGMDCTAFHQSQKMDQIQNDDLLKELAKNKRWRRCPRCRFFVEKIDGCSHISCRFESIILNMCAVTSFVMDADLIGMSIIGVVYRIMPKCDFVIPDAKYLTSIFGFVIPDAKYLTSIPYAV | 346 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele43g0307 | 346 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 76 | 288 | IPR031127 | GO:0004842|GO:0016567 | |
| Lele43g0307 | 346 | SUPERFAMILY | RING/U-box | 98 | 177 | - | - | |
| Lele43g0307 | 346 | ProSitePatterns | Zinc finger RING-type signature. | 118 | 127 | IPR017907 | - | |
| Lele43g0307 | 346 | SMART | ibrneu5 | 168 | 230 | IPR002867 | - | |
| Lele43g0307 | 346 | FunFam | RBR-type E3 ubiquitin transferase | 94 | 181 | - | - | |
| Lele43g0307 | 346 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 148 | IPR001841 | - | |
| Lele43g0307 | 346 | Pfam | IBR domain, a half RING-finger domain | 169 | 230 | IPR002867 | - | |
| Lele43g0307 | 346 | Gene3D | - | 228 | 291 | - | - | |
| Lele43g0307 | 346 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 179 | IPR013083 | - | |
| Lele43g0307 | 346 | SUPERFAMILY | RING/U-box | 178 | 234 | - | - | |
| Lele43g0307 | 346 | SUPERFAMILY | RING/U-box | 241 | 278 | - | - | |
| Lele43g0307 | 346 | ProSiteProfiles | TRIAD supradomain profile. | 95 | 311 | IPR044066 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele43g0307 | Lele-ChrLele43 | 2766832 | 2767951 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele43g0307 | 99 | 278 | C3H Transcription Factor Family | AT2G31770 | 26.486 | 3.06e-14 | 71.6 |