Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0300 ATGGATTACTTCAAGAGTTACGGTAAGGTAGATGAATTCGAGAACGAAGCCTTTCGGAAGAAGACACGTAAGCGCATGATCATCCTCATCGTCTCCTCCATAGTTCTAGGGATAGTGATCGTCGCCGGCGCTGCCGGAACCCTCCTCCACACTCATGATACCGCCTCTTCCGCTAACTCGGTCCCTTCCTCTCATGAGTTAACTCCGGCCGCTTCACTTAAAGCCGTCTGCGAAGTGACTCGCTACCCCAGCTCGTGCGTCTCCAGAATCTCCTCCCTCCCGAGCTACTCCAACACCACCGACCCTGAAATCCTCTTCAAGTTCTCTCTCCGCGTCGCCATTGACGAGCTCTCGAAGCTCGCTGGCTACCCAGCCAAGCTCAGAAGCAATGTCAAGGACCACAGTGTACAGACGGCCCTCGATGTCTGCGTAAATGTTCTTGAAGATGCGGTGGATCGGCTCAACGACTCCATTTCATCGCTGGAAGTCGGAGGAGGAGAGAAGATTCTAACGCCGGCGAAGATTGCCGACATTAGGACGTGGCTGAGCACCACGATTACGGACCAGCAGACTTGTTTGGACGCGATTGAGGAATTGGATTCCACCGCTGCGGAAGAGATTCTTCGTGATATGAGAACCGCCATGGAGAATTCTACAGAATCTGCGAGTAACAGCTTGGCCATTGTCACGAAGATTCTTCGCGTGCTTGCCAAGGTCAACCTCCCGCTCCATCGAAGGCTACTAGGTTTCCCCGAGTGGGTTGGCCCGACAGAGCGGAGGCTACTGCAGCAAGATACTAATAAGACGACGCCAGATGCACTGGTGGCGAAGGACGGAACTGGACAGTACCGGACGATCAATGAGGCGGTCGCGGCCGTGAAGAAGAAAAGTGAGAGTAGATTCGTGATTTACGTGAAGGAAGGTGTTTACGTAGAAAACGTAGAATTGAAGAAAGACAAATGGAATGTGATGATTATCGGAGACGGGAAAAACAAAACCATCATCACTGGCAGCCGCAATAAAATCGACGGCACACGTACATTTGACACTGCCACTTTTGCTGTAAGCGGGAAGGGATTCATTGCCAAAGACATTGGATTCGTCAACAGTGCAGGTCCGGCCAAACACCAAGCAGTGGCGGTGCGATCAGGCTCTGACCAGTCGGTGTTCTACCGGTGCTCCTTCGAAGGCTTCCAGGACACTCTCTACGCGCATTCTAACCGTCAGTTCTATCGTAACTGTGACATCACCGGCACCGTCGACTTCATCTTCGGCAACGCTGCTGCAGTCTTCCAGAACTGTGCCATCAAACCCAGACAGCCTCTTCCAGGCCAGTTCAACACCGTCACAGCTCAGGGCAAGAATGATCCAAATCAGAACACTGGGATCGTAATCCAGAACTCTTCAATTTCTGCTTTTGATAATCTCACTGCGGCCACTTACCTTGGAAGGCCTTGGAAAAATTACTCCACCACCGTGATCATGAAGTCTACAATTGGGCCTTTGTTGGACCCTTTGGGCTGGGCTGAATGGACCACTGATGTGGAGCCTCCAATCACTATATTTTACGCAGAGTACCAGAATACTGGGCCAGGCTCAAATGTGACCCAGAGGGTTCAATGGGCCGGTTATATGCCCCACCTCTCTGAAGATGAGGCAAGGAAGTTCACGGTTGAATCATTCATCCAGGCTAGTCAGTGGCTGCCTGATACACACGTGGAATTTCAGTCCTCGTTATAA 1740 0.5161 MDYFKSYGKVDEFENEAFRKKTRKRMIILIVSSIVLGIVIVAGAAGTLLHTHDTASSANSVPSSHELTPAASLKAVCEVTRYPSSCVSRISSLPSYSNTTDPEILFKFSLRVAIDELSKLAGYPAKLRSNVKDHSVQTALDVCVNVLEDAVDRLNDSISSLEVGGGEKILTPAKIADIRTWLSTTITDQQTCLDAIEELDSTAAEEILRDMRTAMENSTESASNSLAIVTKILRVLAKVNLPLHRRLLGFPEWVGPTERRLLQQDTNKTTPDALVAKDGTGQYRTINEAVAAVKKKSESRFVIYVKEGVYVENVELKKDKWNVMIIGDGKNKTIITGSRNKIDGTRTFDTATFAVSGKGFIAKDIGFVNSAGPAKHQAVAVRSGSDQSVFYRCSFEGFQDTLYAHSNRQFYRNCDITGTVDFIFGNAAAVFQNCAIKPRQPLPGQFNTVTAQGKNDPNQNTGIVIQNSSISAFDNLTAATYLGRPWKNYSTTVIMKSTIGPLLDPLGWAEWTTDVEPPITIFYAEYQNTGPGSNVTQRVQWAGYMPHLSEDEARKFTVESFIQASQWLPDTHVEFQSSL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0300 579 Pfam Pectinesterase 272 564 IPR000070 GO:0030599|GO:0042545
Lele43g0300 579 SUPERFAMILY Pectin lyase-like 271 575 IPR011050 -
Lele43g0300 579 Gene3D - 266 579 IPR012334 -
Lele43g0300 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 233 IPR035513 -
Lele43g0300 579 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Lele43g0300 579 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Lele43g0300 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 232 IPR035513 -
Lele43g0300 579 CDD PMEI-like_3 75 234 - -
Lele43g0300 579 SMART PMEI_2 68 228 IPR006501 GO:0004857
Lele43g0300 579 FunFam Pectinesterase 69 233 - -
Lele43g0300 579 FunFam Pectinesterase 266 579 - -
Lele43g0300 579 Pfam Plant invertase/pectin methylesterase inhibitor 73 228 IPR006501 GO:0004857
Lele43g0300 579 PANTHER PECTINESTERASE 34 571 - -
Lele43g0300 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 232 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0300 Lele-ChrLele43 2716205 2718029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0300 4 573 Carbohydrate Esterase AT1G53840 55.993 0.0 655