LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele43g0277	ATGCTAGTTTCTGTTCTTTGTGGAGTACTCCTTGTGTTCTTGCCTTTTTCTTGTGGTTCCTTTGAGAACCAAGAAAAGGTACTAGAACCATCATCCACTAATTTACTTCCCAATTCCTGCAACGAAACATGTGGGAAACACCATGTTCCTTTTCCATTCTACTTGAACTCGTCTTGTGTGTCAATTTCTCTTGCTTTCAATCTCTCTTGCTCGCATTCCTCTTCGCTTCTGCTCAGAATCGGCTCAGAAAACTATCCAGTGATTGAATTCTTCCCTGATGGTGTCCTAGTGGACTTCCCAGGCACATTATCATGTCGTCAGTACAATGACCTGAACTCGTTTGGTAAAAGTTTAGTGAGAAACGAACACTTTGGAGTCTCAGTGGATAATGTCATTGGTCTCTATGACTGTGAGGATTCTTCTCTGTGCAAAGCAGATTGTGAAACAGTTGACTTGCTTGGTTGTGATGGAAACGATGATGGTGGAGGTGGTTCACTTGGGTGCTGCTATCCACTTTCAGACCATAGTATATGGCATGTAGGAGAAGGGTTTTCAGTGTTCTCTGAGTATGGATGCAGGGGATTTGCTAGTTGGGCTGTTCTGAGAGGGTCAAATTCTGGAAAGCGAGGGGTAAAATTGGAATGGGCTATTCCTAAGAACTCATCCGTGGAAGTTTGCTCAAGTAATGCAGAAATGGTCAATGCTACATCCGTTGAAGGTGGAGCAAGGTGTATGTGTCAAAATGGATATGTTGGTGATGGATTTGCTAATGGAACTGGATGCTTGCAGGTTTCTGGACAAAGTTCTTTGAAGTTTCATGATCTTTTAGAACTTACTCTATTCAGATTTGACATTGGCTTCCTCTTTGATGCGTCCACTAATGCAGCCTGTGTCAAGGATGGACATGAAGCATATGGCAGTGATTGCCACATCAGAAGGAAAGATCAAAGAAAATTTGTCATCATGGCTGGAATCCTTGGTCCAGTTCTTATTGTTGCCTCCATGCTAGCACTATTTTATGTACTTAAAAGAGCACAAAAACCAGGCACATTTGACAATGACCAGGCTCACTATCACAACACCTCCTTTCAAAAGGCTTGTAGAACTCAATTGTTCAGCCTCCACGAACTCGGTGAAGCCACGAAAGGTTTCGCCGAGGATCAGAAACTCATGCACAGCAACAACAATGGTACGATTTTCGCCGGAGTTCTTGGGGATGGATCACATGCAGCTATCCACAAGTTGCAATATGATACTGAGAAAGACCTTATTGAAGTCCTAGCACAAATTGAGGTTCTATCTGCTATTTCACATAAGAATTTGGCCCGCCTTCTCGGTTGCTGTATAGATTCCAGCTACCCTTCTTTAGTTGTCTATGAATATCCTGCAAATGATACCTTGGAGGATCATTTACATCAAAGAAAGGGACACAAACTTTGTTTGGAATGGAACAAGAGATTGACTATTGCTGCAGAAACAGCTAGTGTTCTTGCTTTCTTACAATATGATATTTCTCCTCCAATATTCCACCAAAACCTTAAACCTGGTTGCATATTCCTAGATAATGATTTTTCTGTCAAGATTGCAGGATTCAGGCTAGTGAATACCAAATTCAACTATCACTATGACAATAACAACAACATTGATCAAGGCTTGCATTTCTGCAAGAATGACGTTTATGACATGGGAGTGCTGCTTCTTGAGATCATTTCAGGCTCTAATAATAATCACTTGAACAACTCCCCATCTCAAGCACTTCAAAAGATTAGGACAGGGAAGCTCGAAGAAATCATGGATCCCTTACTCTACTACCACGAGCAACCTCGTACTTGCCAAGAACAGATACAGATAATAGCGGACCTTGCAACAAGATGTATGTTGTTTGGTGCAGATGGAAAGATGGGGATGATTGATGTTGCAAGAGAGTTGACACACATAACAAAAGAGAGTGTTGCTGATGGAGGAATCACAAAAGGACCTGTTTTGGAAGTGACATTCTCAAATTCTAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGCGTTTTCAGACCAATTTTTCTCTCACTGGCATCGAAAACAAAGTCTTAAAATTTCCTTTTCCTTGTGTGTCATGTCCTAAGATGAGTCAGCCAGAACAGAATAATGCTGAAGCTAACGACAGCCGTCCTCGTTTGAATCAAAGGATTCTTTCATCTTTGTCAAGAAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGGACCCGATGCTCCCAACATTTTCAATTGTGTTGTGGAAATCACTAAGGGAAGCAAGGTCAAATACGAACTTGACAAAAAGACTGGGATGATCAAGGTCGATCGCATTCTGTATTCATCAGTTGTTTATCCTCACAACTATGGCTTCATTCCTCGTACTCTTTGTGAAGATAATGACCCTCTTGATGTCTTGATCCTTATGCAGGAGCCGGTTCTTCCTGGTTGTTTCCTGAGAGCCAGGGCCATTGGACTGATGCCTATGATTGACCAGGGAGAGACCGATGATAAGATTATTGCAGTATGTGCTGATGATCCAGAGTATAAGCACTACAATGACTTCAAAGAACTTCCACCTCATCGCCTCTCTGAAATAAGGCGCTTCTTTGAAGATTACAAGAAGAATGAGAATAAGGAGGTAGCAGTTAATGACTTTTTGCCTCCTTCTACTGCCGTTGAAGCCATCCAGTACTCAATGGATCTTTATGAAGAGTATATTCTGCGCTCCTTGAGGCAATAG	2766	0.4183	MLVSVLCGVLLVFLPFSCGSFENQEKVLEPSSTNLLPNSCNETCGKHHVPFPFYLNSSCVSISLAFNLSCSHSSSLLLRIGSENYPVIEFFPDGVLVDFPGTLSCRQYNDLNSFGKSLVRNEHFGVSVDNVIGLYDCEDSSLCKADCETVDLLGCDGNDDGGGGSLGCCYPLSDHSIWHVGEGFSVFSEYGCRGFASWAVLRGSNSGKRGVKLEWAIPKNSSVEVCSSNAEMVNATSVEGGARCMCQNGYVGDGFANGTGCLQVSGQSSLKFHDLLELTLFRFDIGFLFDASTNAACVKDGHEAYGSDCHIRRKDQRKFVIMAGILGPVLIVASMLALFYVLKRAQKPGTFDNDQAHYHNTSFQKACRTQLFSLHELGEATKGFAEDQKLMHSNNNGTIFAGVLGDGSHAAIHKLQYDTEKDLIEVLAQIEVLSAISHKNLARLLGCCIDSSYPSLVVYEYPANDTLEDHLHQRKGHKLCLEWNKRLTIAAETASVLAFLQYDISPPIFHQNLKPGCIFLDNDFSVKIAGFRLVNTKFNYHYDNNNNIDQGLHFCKNDVYDMGVLLLEIISGSNNNHLNNSPSQALQKIRTGKLEEIMDPLLYYHEQPRTCQEQIQIIADLATRCMLFGADGKMGMIDVARELTHITKESVADGGITKGPVLEVTFSNSSLLQMISMSPDSMRFQTNFSLTGIENKVLKFPFPCVSCPKMSQPEQNNAEANDSRPRLNQRILSSLSRRSVAAHPWHDLEIGPDAPNIFNCVVEITKGSKVKYELDKKTGMIKVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLILMQEPVLPGCFLRARAIGLMPMIDQGETDDKIIAVCADDPEYKHYNDFKELPPHRLSEIRRFFEDYKKNENKEVAVNDFLPPSTAVEAIQYSMDLYEEYILRSLRQ	921

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele43g0277	921	Pfam	Wall-associated receptor kinase galacturonan-binding	40	89	IPR025287	GO:0030247
	Lele43g0277	921	Gene3D	Transferase(Phosphotransferase) domain 1	463	656	-	-
	Lele43g0277	921	ProSiteProfiles	Protein kinase domain profile.	385	648	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele43g0277	921	PANTHER	INORGANIC PYROPHOSPHATASE	707	920	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele43g0277	921	Gene3D	Laminin	223	257	-	-
	Lele43g0277	921	Gene3D	Phosphorylase Kinase; domain 1	348	461	-	-
	Lele43g0277	921	SUPERFAMILY	Inorganic pyrophosphatase	737	916	IPR036649	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele43g0277	921	Gene3D	Inorganic pyrophosphatase	739	917	IPR036649	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele43g0277	921	CDD	pyrophosphatase	756	909	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele43g0277	921	SUPERFAMILY	Protein kinase-like (PK-like)	368	643	IPR011009	-
	Lele43g0277	921	Pfam	Protein tyrosine and serine/threonine kinase	396	594	IPR001245	GO:0004672\|GO:0006468
	Lele43g0277	921	Hamap	Inorganic pyrophosphatase [ppa].	756	912	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele43g0277	921	ProSitePatterns	Inorganic pyrophosphatase signature.	807	813	-	-
	Lele43g0277	921	Pfam	Inorganic pyrophosphatase	760	911	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Lele43g0277	921	FunFam	Soluble inorganic pyrophosphatase 4	739	917	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele43g0277	Lele-ChrLele43	2498852	2505451	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele43g0277	40	646	Receptor kinase-like Gene Family	AT2G23450	27.457	1.11e-47	180

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_URK-3	Lele43g0277		PK_Tyr_Ser-Thr	4.8e-16	CL0016