Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0275 ATGGACGCATACGCTTCTGGAGAAGAAGTGGTTGTCAAGACAAGAAAACCATATACAATCACAAAGCAAAGAGAACGATGGACAGAGGAGGAGCATAATAAGTTCGTCGAAGCTCTAAAGCTCCATGGAAGAGCATGGCAGCGCATAGAAGAACATATAGGAACAAAGACCGCTGTGCAAATCAGGAGCCATGCACAGAAGTTCTTTTCAAAGGGTTTTGGTTTAAGCACATGTCCAAGTTGTCATATGAGATTATTGGAAAAATACTTAAAGACTTCTACTGCAGCTGTGCTGGTTGAGAGCAAGAAGTTTAGAAGGGAGGAACTTGCTGATGGTTCATTCATTCTGCAACATAGAATCAGACCTTGA 369 0.4201 MDAYASGEEVVVKTRKPYTITKQRERWTEEEHNKFVEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFSKGFGLSTCPSCHMRLLEKYLKTSTAAVLVESKKFRREELADGSFILQHRIRP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0275 122 CDD SANT 26 69 IPR001005 -
Lele43g0275 122 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Lele43g0275 122 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Lele43g0275 122 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Lele43g0275 122 FunFam protein REVEILLE 6 isoform X1 26 72 - -
Lele43g0275 122 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Lele43g0275 122 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Lele43g0275 122 PANTHER SWI/SNF COMPLEX-RELATED 7 71 - -
Lele43g0275 122 SMART sant 23 71 IPR001005 -
Lele43g0275 122 Gene3D - 26 72 - -
Lele43g0275 122 SUPERFAMILY Homeodomain-like 18 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0275 Lele-ChrLele43 2485844 2490366 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele43g0275 Myb_DNA-binding 2e-14 CL0123