Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0249 ATGGATGACTTGATCATCCCTCCTTCTTCCTCTTCTTCTCTTCTCTGTCTCCCCCGAGATACCCAACCTTCTCTTCAGCAAAAGCTCCAATTCCTCCTCAACAGTCAACCTGATTGGTGGGTCTACGCCATTTTCTGGCAGATTTCCAACGACGACGTTCATGGCAATCTCCTCCTCTCCTGGGCTGAAGGACATTTCAATGGCACCAAGGACACCTCCCCTCGTCTCTCCAGTTCCACCACCACTACTTCCGCCGCCCCACATTACACAGACCTCCACTCTGACAGAACAAGGCTCTTGAACAACATTCACTCTCTCATCAACGATAATTCCCGCAATAGCGCCAACATTTGCAGCGACCTCCACGATACTGAATGGTTCTACGTCATGTCCTTGACTCGCACCTTCTCTGTCGCTTCCTCTGCTTCTCTCCCCGGTAAAGCCTTCGCTTCTGGTTCTCTGCTCTGGCTCAACGGCGACCACGACCTTCAATTTTGCAACTGTGAGAGAGCCAAGGAGGCTTTCTTACACGGGGTTGAGACTCTGATTTGCATCCCCACCAATCACGGAGTCATCGAAATGGGCTCCTCCGATCTCATCCCCGAAAACTGGGCTCTCGCGCAGCAAGCTAAGGCTCTGTTTGGGTCTGATCTAATCGCCAAGCAACCAAACAACAACCTGATTCAGTTCTTCGACGATCAGAATATTTCCTTCGCCGATATCGGCATTATCGCCGGCGTGCAAGAAGAAGATGACAATTCCCACGTGCCCAACGGAAATAACAGCTCAAGGAATAATAACGGCAAGCGAAAGGCGGAACAAAGGAATAAGGCGAATTCGGGATTCAAGTTCGGGTATGCGGATTCGGAGCATTCCGATTCGGATTGTAATCCTTCGATAGAGAAAAGGACCCCGAAGAAGAGAGGGAGAAAACCCAGTCTGGGCCGCGAAACGCAGCTGAACCACGTGGAGGCAGAGCGGCAGCGACGGGAGAAGCTGAACCACCGGTTCTACGCGCTACGCGCTGTGGTTCCGAACGTGTCAAGAATGGACAAGGCATCTCTCTTATCGGACGCCGTGGACTACATCAACGAGTTGAAATCGAAGATCGAGGACCTGGAGTCGCAGATTCAGAAACATACGAGCAGCAACAATAACAGCAAGAAAGTGAAAATGGAAATGGCGGACACCAGCACGGCAGACAACCAGAGCGCGACAACTTCAACGGTGGAGCAAACGACGACGACGACGACTTCGCAGGGAGGGGGAAGCGCGACGGGGATGGAGGTGGAGGTGAGGATGATGGGACCGGAGGCAATGGTGAGGGTCCAATCGGAGAAGACGAACCACCCGGGGGCGAGGCTAATGGGGGCGTTGAGAGACTTGGATCTAGGGGTTCACCATGCAAGCATGTCGTGCGTGAATGAGCTCATGCTGCAAGACGTGCTGGTGAAGATTCCTGAAGATTTGAGAAACGAAGAAGCTCTCCAATCTGCCATTCTCGGGCGTTTGGCTCCCTAG 1521 0.5279 MDDLIIPPSSSSSLLCLPRDTQPSLQQKLQFLLNSQPDWWVYAIFWQISNDDVHGNLLLSWAEGHFNGTKDTSPRLSSSTTTTSAAPHYTDLHSDRTRLLNNIHSLINDNSRNSANICSDLHDTEWFYVMSLTRTFSVASSASLPGKAFASGSLLWLNGDHDLQFCNCERAKEAFLHGVETLICIPTNHGVIEMGSSDLIPENWALAQQAKALFGSDLIAKQPNNNLIQFFDDQNISFADIGIIAGVQEEDDNSHVPNGNNSSRNNNGKRKAEQRNKANSGFKFGYADSEHSDSDCNPSIEKRTPKKRGRKPSLGRETQLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKSKIEDLESQIQKHTSSNNNSKKVKMEMADTSTADNQSATTSTVEQTTTTTTSQGGGSATGMEVEVRMMGPEAMVRVQSEKTNHPGARLMGALRDLDLGVHHASMSCVNELMLQDVLVKIPEDLRNEEALQSAILGRLAP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0249 506 Pfam Helix-loop-helix DNA-binding domain 321 366 IPR011598 GO:0046983
Lele43g0249 506 MobiDBLite consensus disorder prediction 311 328 - -
Lele43g0249 506 MobiDBLite consensus disorder prediction 377 425 - -
Lele43g0249 506 MobiDBLite consensus disorder prediction 288 303 - -
Lele43g0249 506 MobiDBLite consensus disorder prediction 253 267 - -
Lele43g0249 506 CDD bHLH_AtAIB_like 315 389 - -
Lele43g0249 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 381 IPR036638 GO:0046983
Lele43g0249 506 Gene3D - 311 396 IPR036638 GO:0046983
Lele43g0249 506 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 214 IPR025610 -
Lele43g0249 506 Coils Coil 356 390 - -
Lele43g0249 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 366 IPR011598 GO:0046983
Lele43g0249 506 PANTHER MYC 21 503 IPR045084 GO:0003700|GO:0006355
Lele43g0249 506 MobiDBLite consensus disorder prediction 250 328 - -
Lele43g0249 506 SMART finulus 323 372 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0249 Lele-ChrLele43 2247668 2249188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0249 25 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 32.907 3.79e-88 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele43g0249 bHLH-MYC_N 6.5e-49 CL0161