Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0242 ATGTCAGCTCATTGTGAATTCTCTCATTCTGCAGCAGCAGAAACACACACCACCATCACACCAACTTCTTCATCTTCATCATCATCATCAACAAGAATACCGAGCTTCAGGAACAAGAAGAACGGCAGTAGCAAGATAAGGTTCAGTGAGGAGCAAATCAAGTTATTGGAGTCCATTTTCGAGACAGAGTCCAAGCTCGACCACACAAAAATGTTGCAGCTTGCTTCAGAACTTGGCTTGCAGCCTCGCCAGGTGGCCATATGGTTCCAGAACAGACGAGCTAGATCCAAATCCAAGCATCTCCAACGTTCCTACTCTGTTCTCCAAGCAAATTACGATGCTCTGGCTTCCGAATTCGAGGCCCTCAAGAAGGAGAATCAAGCATTACTGCTAGAGTTGCAGAAGCTGAAAGATTTGGAAGATGAAACCTTTTGTTGTAAGAAAGTGAGAGATGAAAATATGAAGCCAAGTCCATCAATGGAAAGAACAGAACAGATAGTTGGGGCTGTTTCAGATGATGATAGGAGCATGCAGGCAGAATATTTTGGGCTTGAAGATGATGAAGAACCTACGATTATGAACTTGGCTGATAAGAATACAGATGATCCCTTGACATCATCACATCAAGAAGTATGGAGAAATCTTGAATCCACTGATGACCTCCTGGCCCAGTGTGACAGTGGTTATCAATGGTGGGACTTCTGGTCATGA 711 0.4388 MSAHCEFSHSAAAETHTTITPTSSSSSSSSTRIPSFRNKKNGSSKIRFSEEQIKLLESIFETESKLDHTKMLQLASELGLQPRQVAIWFQNRRARSKSKHLQRSYSVLQANYDALASEFEALKKENQALLLELQKLKDLEDETFCCKKVRDENMKPSPSMERTEQIVGAVSDDDRSMQAEYFGLEDDEEPTIMNLADKNTDDPLTSSHQEVWRNLESTDDLLAQCDSGYQWWDFWS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0242 236 PRINTS Lambda-repressor HTH signature 70 79 IPR000047 GO:0003677
Lele43g0242 236 PRINTS Lambda-repressor HTH signature 79 95 IPR000047 GO:0003677
Lele43g0242 236 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Lele43g0242 236 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 196 IPR045224 GO:0003700
Lele43g0242 236 Pfam Homeobox associated leucine zipper 99 139 IPR003106 GO:0006355|GO:0043565
Lele43g0242 236 Gene3D - 13 98 - -
Lele43g0242 236 CDD homeodomain 47 100 IPR001356 GO:0003677
Lele43g0242 236 Pfam Homeodomain 45 97 IPR001356 GO:0003677
Lele43g0242 236 ProSitePatterns 'Homeobox' domain signature. 74 97 IPR017970 GO:0000981|GO:0006355
Lele43g0242 236 Coils Coil 105 142 - -
Lele43g0242 236 MobiDBLite consensus disorder prediction 11 42 - -
Lele43g0242 236 SUPERFAMILY Homeodomain-like 23 99 IPR009057 -
Lele43g0242 236 MobiDBLite consensus disorder prediction 1 43 - -
Lele43g0242 236 SMART HOX_1 41 103 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0242 Lele-ChrLele43 2162984 2163792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0242 47 236 Homeobox Transcription Factor Family AT3G61890 43.750 1.69e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele43g0242 Homeodomain 2.6e-17 CL0123