Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele43g0228 | ATGGTACCTGGTGGAATAGTTGCGAACATGAGGCCGGTTTTTGTTGGGAACTTCGAGTACGATACCCGTCAATCTGAGCTGGAGCGCCTCTTTGCTAAGTATGGGAGGATAGATCGTGTTGACATGAAATCGGATCTGAATTTTGGATTTAAATCTTTTATTGCAATCATGATTTTGTTCCTCATTGAACGCCTCTACCGCTTCATGTGCATCAGCCCTCGCATATATGCAGGTTTTGCGTTTGTGTATTATGAGGATGAGCGTGATGCTGAAGATGCAATTAGGGCATTAGACAATTTTCCATTAGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGAGGTGAACGTGGTCGTCATCGAGATGGGTCCAGAGCAAACCAGAGGCCCACAAAAACATTATTTGTGATCAACTTCGACCCAATTCGCACTAGAGTTCGTGACATAGAAAGACACTTTGAACCATATGGGAAAGTTCTCCATGTTCGGATTCGTCGGAATTTTTCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCGCTCGAGTGTACACACATGAGCAAGATACTGGATAGGGTGGTTTCAGTGGAGTATGCTCTGAGGGATGACGATGAGAGAGGTGACAGATATTATGACAGCCCCAAAAGAGGAGGAGGGAGTTATGGAAGATCACCCAGTCCAGTTGCTCGTAGGCGACCTAGTCCTGATTATGGTCGTCCACGCAGCCCAGAGTATGAAAGGTACAATGGACCAGCATACGACAGACGTAGGAGTCCTGATTATGGCAGGCCAAGGAGCCCTGATTATGGTAGATACCGCAGCCGCTCGCCAATCCGAAGGTCCAGGACCTGA | 861 | 0.4681 | MVPGGIVANMRPVFVGNFEYDTRQSELERLFAKYGRIDRVDMKSDLNFGFKSFIAIMILFLIERLYRFMCISPRIYAGFAFVYYEDERDAEDAIRALDNFPLGYDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFSFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPKRGGGSYGRSPSPVARRRPSPDYGRPRSPEYERYNGPAYDRRRSPDYGRPRSPDYGRYRSRSPIRRSRT | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele43g0228 | 286 | FunFam | Serine/arginine-rich splicing factor RS31 | 125 | 215 | - | - | |
| Lele43g0228 | 286 | SUPERFAMILY | RNA-binding domain, RBD | 76 | 208 | IPR035979 | GO:0003676 | |
| Lele43g0228 | 286 | Gene3D | - | 7 | 128 | IPR012677 | - | |
| Lele43g0228 | 286 | MobiDBLite | consensus disorder prediction | 237 | 278 | - | - | |
| Lele43g0228 | 286 | SMART | rrm1_1 | 12 | 112 | IPR000504 | GO:0003723 | |
| Lele43g0228 | 286 | SMART | rrm1_1 | 134 | 200 | IPR000504 | GO:0003723 | |
| Lele43g0228 | 286 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 11 | 116 | IPR000504 | GO:0003723 | |
| Lele43g0228 | 286 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 133 | 278 | - | - | |
| Lele43g0228 | 286 | MobiDBLite | consensus disorder prediction | 208 | 286 | - | - | |
| Lele43g0228 | 286 | CDD | RRM2_AtRSp31_like | 134 | 203 | - | - | |
| Lele43g0228 | 286 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 50 | IPR035979 | GO:0003676 | |
| Lele43g0228 | 286 | Gene3D | - | 129 | 213 | IPR012677 | - | |
| Lele43g0228 | 286 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 133 | 204 | IPR000504 | GO:0003723 | |
| Lele43g0228 | 286 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 78 | 101 | IPR000504 | GO:0003723 | |
| Lele43g0228 | 286 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 135 | 197 | IPR000504 | GO:0003723 | |
| Lele43g0228 | 286 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 13 | 53 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele43g0228 | Lele-ChrLele43 | 2054707 | 2057983 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele43g0228 | 78 | 210 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 25.170 | 6.44e-07 | 48.5 |