Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0214 ATGAAGATTGAGGTGGGTGTAGGAGGAGGAGGCATGTTGTGCCACGAAGACGAACGAGACATGGTGGCGGCGGTTCTCGGCGGTCGAGCTTTCGATTACTTGGTGAACCACTCGGTTTCTAATGAGAATCTGTTAATGGCCGTTGTCACCGACGAGAATCTCCAGAAGAAGCTCTCGGATCTCGTGGAGCGTCCAAACGTATCGAATTTCACCTGGAACTACGCCATTTTCTGGCAAATTTCTCAGTCAAAATCCGGCGAATGGGTCTTAGGTTGGGGCGATGGGTGTTGCGGAGAACCCGACGAAGCAGAAGACGACGGATTAAAAGCGGTCCTTCGCATGGAGGATGAAGTTCAGCAGAGGATGAGGAAGAGAGTGTTGCAGAAGCTTCACACTACCTTTGGTGGTTCAGAAGAAGACAATTACGTTCATGGATTAGGCCGGGTCACTGATACCGAGTTGTTCTTTCTGGCTTCTATGTACTTCTCTTTCCCTCGTGGCCATGGCGGTCCAGGTAAGTGTCTTGCGTCTGGTAAACATTTATGGCTCACAGATGCTCAGAAATCTGCGGTTGATTATTGTGTGAGATCGTTTCTGGTCAAATCCGCCGGAATCCAGACCGTTGTTTTGATCCCTACTGATATGGGAGTGGTTGAACTGGGTTCTGTGAAGTTGGTGAAGGAGAACTTAGAATTGTTGCAGGCAATCCAATCGGAGTTTTCCATTGCATCTACATTCCCGAGGGCTAATTCGTCAATTCCACCACCGACTCCTACTGCTCCTCCTGTGACGGCGGAGAAAAGAGATGCACTTACCGTCTTGCCGGTTTTAACAGTTTCTGACAAAGTCGAAGTAGTTCCAAAGATTTTCGGGCAGGATTTGAACAAGACGAACCCGGTTCGAACCACCCAGTTCAGAGAGAAACTTGCTATTAGGAAAATGGAGGACAGGCCATGGTTAGGAGGTCATCATCATCATCTCTCCAATGGGGCTCATCCTCATCGTAATGGTGTTCATCCTTCAAGTTGGACAAGGGCAGTTACTAATAATAACAGTCCTGTTGATCAAACTTACGTTTCTAGATCGTCGGCGACGAGCAATGTGCCGGTTCTGGACCTTGTAAATGGCGTTAACAACTATAATAATCAGCCGCCACAGAGGAAAGCTCCACTGCAGATTGATTTTTCAGGAGCTACTTCCAGGTCTGCTGTGACTGCCGTGAGACCAAATGGTGGTGAATCAGAGCAATCTGATGCTGATGCTGCTTCATTCAGGGAGGAGCTGACGGCCGGAGGAGGAGGAGCCGATGAACGGCGGCCAAGGAAACGTGGGAGGAAGCCGGCGAACGGCAGGGAAGAACCTCTGAACCATGTGGAAGCTGAGAGACAAAGGCGCGAGAAACTGAACCAACGGTTCTATGCTTTAAGAGCTGTGGTGCCTAATATCTCCAAGATGGACAAAGCCTCCTTGCTGGGAGACGCCATTGCTTACATCAATGAGCTTCAGGCAAAGCTCAGGGCAATGGAAACTGAGAGAGAGATCAGACTAGGAGGAAGCACTTCGAGTGATCAATCGTTAGATCCCAGCAATATTCAACAATCTCCTAGTCAAGTGGAAGTCCACGCCCATCACGACGAGGTTGTCGTGAGGGTGATCTCGCCCATCAATTCCCACCCGGTCTCAGCAGTGATCAGAGCGCTGAAAGAAGCACAAGTGAACATCGTTGATTCGAAGCTCGCCGCCGGGAACGAAGCCGTGTTGCACACATTCGTAATCAAGCCTCAAGGAGCTGATCAGCAGCTGACGAAGGAGAAGTTGATTGCTGCATTCTCTCGCGAATCCAATTCCTCGGAACCATTTTCCTTGACTGGCCATTAA 1878 0.4963 MKIEVGVGGGGMLCHEDERDMVAAVLGGRAFDYLVNHSVSNENLLMAVVTDENLQKKLSDLVERPNVSNFTWNYAIFWQISQSKSGEWVLGWGDGCCGEPDEAEDDGLKAVLRMEDEVQQRMRKRVLQKLHTTFGGSEEDNYVHGLGRVTDTELFFLASMYFSFPRGHGGPGKCLASGKHLWLTDAQKSAVDYCVRSFLVKSAGIQTVVLIPTDMGVVELGSVKLVKENLELLQAIQSEFSIASTFPRANSSIPPPTPTAPPVTAEKRDALTVLPVLTVSDKVEVVPKIFGQDLNKTNPVRTTQFREKLAIRKMEDRPWLGGHHHHLSNGAHPHRNGVHPSSWTRAVTNNNSPVDQTYVSRSSATSNVPVLDLVNGVNNYNNQPPQRKAPLQIDFSGATSRSAVTAVRPNGGESEQSDADAASFREELTAGGGGADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLRAMETEREIRLGGSTSSDQSLDPSNIQQSPSQVEVHAHHDEVVVRVISPINSHPVSAVIRALKEAQVNIVDSKLAAGNEAVLHTFVIKPQGADQQLTKEKLIAAFSRESNSSEPFSLTGH 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0214 625 MobiDBLite consensus disorder prediction 515 534 - -
Lele43g0214 625 MobiDBLite consensus disorder prediction 402 421 - -
Lele43g0214 625 MobiDBLite consensus disorder prediction 431 463 - -
Lele43g0214 625 MobiDBLite consensus disorder prediction 428 463 - -
Lele43g0214 625 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 54 240 IPR025610 -
Lele43g0214 625 CDD bHLH_AtAIB_like 449 514 - -
Lele43g0214 625 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 453 517 IPR036638 GO:0046983
Lele43g0214 625 PANTHER MYC 41 609 IPR045084 GO:0003700|GO:0006355
Lele43g0214 625 SMART finulus 458 507 IPR011598 GO:0046983
Lele43g0214 625 Coils Coil 491 511 - -
Lele43g0214 625 Pfam Helix-loop-helix DNA-binding domain 456 502 IPR011598 GO:0046983
Lele43g0214 625 Gene3D - 446 515 IPR036638 GO:0046983
Lele43g0214 625 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 452 501 IPR011598 GO:0046983
Lele43g0214 625 MobiDBLite consensus disorder prediction 514 534 - -
Lele43g0214 625 FunFam Transcription factor bHLH13 445 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0214 Lele-ChrLele43 1937266 1939143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0214 10 617 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.906 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele43g0214 bHLH-MYC_N 8.3e-55 CL0161