Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0206 ATGGAATCTAGTAGCCTGGATAGTACTGTATCATCCTTGACTATGGATGATGATGAGCATATTCCCCGTCAGTTTTCTTCGATCACGACGAAGCTGCATAACAATGATCCTGGTTCTACCGGCTTCCACGAGCTGCTTGAATGCCCTGTTTGCGCCAGCTCAATGTATCCTCCAATCCATCAGATGAATGCTTCACTTAGTAACCTCAATTTCATGGCAGAGGCTTACCTCTCTTCAACCCAATCATATTCACATTACTTTGCAAAAAGAGTGGAGGATAAAGGGTTGTTCCAGGGATATGGTTCACTTGGTTGTGCAGAGATATTTCCCTATTATAGCAAACTCAAACACGAGTCTATTTGTAACTTCAGACCATACAACTGCCCCTATGCCGGGTCAGACTGTTCCATTGTCGGGGATATTCCATCCCTCGTTGCTCATTTATGGGATGACCATAGGGTTGATATGCATTCGGGATGCACATTTAACCATCGCTACGTCAAGTCTAATCCTGTGGAAGTAGAGAATGCTACATGGATGTTAACCGTCTTCCACTGTTTTGGTCAGTACTTCTGTCTCCATTTCGAAGCCTTCCAGCTTGGCATGGCTCCCGTTTACATGGCGTTCCTCCGGTTCATGGGTGACGAAAGAGAAGCTCGGAGCTACTGCTACAGTCTGGAGATCGGAGGGAATGGACGAAAACAAATATGGGAGGGCAGCCCAAGAAGCATAAGAGACAGCCATAAGAAAGTCAGGGACAGCCATGATGGCCTCATTGTGTACAGAAACATGGCGCTTTTCTTCTCAGGCGGCAACAGGAAAGAGTTGAAGCTACGAGTTGCCGGAAGGATCTGGAAAGAACAGCAAAATCCTGAAGGTGGAGTTTGCATACCCAATCTCTGTAGTTAA 909 0.462 MESSSLDSTVSSLTMDDDEHIPRQFSSITTKLHNNDPGSTGFHELLECPVCASSMYPPIHQMNASLSNLNFMAEAYLSSTQSYSHYFAKRVEDKGLFQGYGSLGCAEIFPYYSKLKHESICNFRPYNCPYAGSDCSIVGDIPSLVAHLWDDHRVDMHSGCTFNHRYVKSNPVEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARSYCYSLEIGGNGRKQIWEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGNRKELKLRVAGRIWKEQQNPEGGVCIPNLCS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0206 302 CDD Sina 154 282 - -
Lele43g0206 302 SUPERFAMILY TRAF domain-like 100 284 - -
Lele43g0206 302 ProSiteProfiles Zinc finger SIAH-type profile. 93 153 IPR013010 GO:0008270
Lele43g0206 302 FunFam E3 ubiquitin-protein ligase SINAT5-like 149 281 - -
Lele43g0206 302 Pfam Seven in absentia protein family 101 280 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele43g0206 302 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 287 - -
Lele43g0206 302 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 163 281 IPR008974 GO:0005515
Lele43g0206 302 FunFam E3 ubiquitin-protein ligase SINAT3 99 148 - -
Lele43g0206 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 148 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0206 Lele-ChrLele43 1881829 1884334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0206 3 288 C3H Transcription Factor Family AT2G41980 57.823 1.67e-119 343