Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0200 ATGATAATTAAGCGGACAATGAAAATTGAAATGCCGAACCTGAAACGGTGTAAGCTAGAGGAGCAGGATGGCGAGGACTATGGGTGTACTTCGATTCCGAAGAAACGGAAGGTTAATGGGTTTTATTCTCTTGGTATGCCCGGCGAGGCTGAAGATTTCAGCAGCGGTTCAGGGTCGTGGTGCAGTGAAGGATCACATTGGGCTAGTGAGGTTCTATCGAATTCAAATTCTACGCCATTGAATAGTAGAACAGCAATGGAGGAAGGCTCTGAAAGGATTCGGCCTCCACTATTACGGTCGTCTCGTGGTCGCTCTCAAACGCTGCCATCGAGGTTCAATGATTCTGTTCTCGGTACATGGAAGAACCGGGGAATCAAAGTGGAGGACGCAGACTCCAGCTTTGAAGATGATAATATTCTAGTTGAAGATAGTGTGGGGGTTAGTGGATTGGGATTTGTAAAACAGGGAAAGGGAAATAACTATGGCTTCAAAAAGTCGAAGTATTATTCATATCCTAACATGGATGGGGAGGAATTAGGATTCGACGACTCAGGTTTAAACAATTTTGACCAACGGAAGCTTACAAATTCTTTTAGCACTACGAGAACATCAATTAATGGCCATCGTTCATCAGCAGTTAAAACAGAGAGTTATACGTCGGGTTTAAGTTTTGAGGGTGTTGACCTAAAGCTTGATCGAAATGCTGCAAAAAGGAAAGATATCTATAAACCGGAGGATTTTGCTTTGGGTGACATAGTTTGGGCAAAGTGTGGAAAGAGATATCCAGCTTGGCCTGCTGTAGTGATTGATCCTATCTTGCAAGCTCCGAAGTCCGTTCTGAGCTGTTGTGTTCCTGGTGCAATTTGCGTGATGTTTTTTGGGTATTCAAAAAATGGAAAGCAAAGGGACTACGCATGGGTGAAGCAGGGAATGATATTCCCCTTTGCGGAGTTCATGGGCAGATTCCAGGGCCAGACTCGGCTGTACAAGAGCAAACCGAGTGACTTTAAGATGGCGCTGGAGGAGGCATTGTTGGCAGAAGACGGTTTTCTGGATTCACATATGGGAGCTGAGCAGATAACAAATGCAGAAGCCCATCCCAATGGGTTCGTGGAGGCTACAAGTTCATATGTTGATCCAGAATATGACTCTCAAGAGGAGGATATGAGACCTTGTGCTGGCTGTGGTCTGACTTTGCCCTGCAAAACCATTAAGAAGATGAAGGATTCCAATTCTTTAGCTCAACTTTATTGCAAACTTTGTGCCAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTGTGTTGTGACGGTTGTAATGTTTGGATCCATGCTGAATGTGCTAAAATATCCAGTAGACTTTTTAAGGATCTGGAACATATAGATTACTATTGTCCAGATTGCAAAGCAAATTTCAACTGTAAATTTTCAGCATCACAAACATGCAAGCCAAAAATCAAATCAACAGAAAATAGCCAAAAGCCTGTTATACCTGATAAGGTAACCGTGGTGTGCAACGGCATGGAAGGTTATTACATTCCAAAGCTTCATCTAGTCATGTGCAAGTGTGGCTCATGTGGGGTGCGAAAGCAGACACTGAGTGAATGGGAACGGCATACGGGTTGCAGAGCTAAAAAATGGAAATATAGTGTGAAAGTAAAGAGTACAATGCTTCCTCTTGAAAAATGGATCAACGAAAACAGTACACAAGGTGAAGTTTCTATGCAGTTAGATCAACAGCAGGTGCTTGCCTTTCTGCAAGAGAAGTATGAACCAGTTTATCCAAAGTGGACTACAGAAAGATGTGCCGTTTGTAGATGGGTTGAAGATTGGGATGATAACAAAATTATCATCTGCAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGAGCAAAGAATGTCAAGGATTTTACTTCTTGGGTCTGTAGGGTGTGCGAAACCCCAGATGTTGAGAGGGAGTGTTGCCTTTGTCCTGTTAAAGGTGGAGCTCTAAAGCCAACTGATGTTGAGATGCTGTGGGTTCATGTCACATGTGCTTGGTTTCGGCCTGAAGTTGGATTCTCAAACCATGAGACAATGGAACCTGCCTTTGGAATCCTTAAAATTCCTCCAAGTTCCTTCTTGAAGACCTGTGTTATCTGTAAACAAAGCCATGGATCCTGTGCAAGTTGTTGCAAGTGTGCTACTCATTTTCATGTGATGTGTGCATCTAGGGCCGGATACAGCATGGAATTGCATTCTATGGAGAAGAATGGAGTTCAGATAACGAAGAAGTTAATATATTGTGCATTCCACAGGCTTCCAACCCCAGATTCCGTAATGGTTATACATACTCCCTTGGGGGTCTTCTCTCCCAGAACTTCCCTGCAAAATCATAAGGGATGCTTCAGGGGTTCGAGGCTGGTATCATCAAAAAACGTAGAACTTCTTCAATCTTCAGCCTCTGAGACTAATGGATTTGAACCACTGTCTGCTGCAAGATGTCGTGTTTATAGGTCTTTCAAGAAGGCTGATGAGCCAATAATACATTTAGTGAGGGGTCCAAGTCGTCATTTATTAAGTTCTATAATTCAGTTGAACAGCTACAAGGACTCAGATGATTCTAAAGTATTTACTTCGTTCAAGGAACGTCTTCACCATTTGCAGAAAACTGAAAATTATCGAGTTTGCTTTGGAAAATCGGGTATACATGGATGGGGTCTCTTTGCTCGCAGAGATATTCAAGAAGGAGAGATGGTTGCTGAGTACCGTGGTGAGCAGGTTAGACGAAGTGTTGCTGATATGAGGGAGGCTAAGTATCGTTCAGAAGGCAAAGACTGTTATCTGTTCAAGATCAGTGAAGAAGTGGTCATCGATGCAACACATAGGGGAAATATAGCGCGCCTGATAAACCACTCCTGCATGCCTAACTGCTATGCAAGGATTATGAGCATGGGTGCTGAGGAGAGCCGGATTGTTCTTATTGCCAAGACACATGTTTCTGCTGGGGAAGAACTAACGTATGATTACTTGTTTGATCCGGACGAGCGGGATGAACTGAAAGTTCCTTGCCTTTGTAAAGCCCCCAATTGTAGGAAATTTATGAATTAG 3135 0.4316 MIIKRTMKIEMPNLKRCKLEEQDGEDYGCTSIPKKRKVNGFYSLGMPGEAEDFSSGSGSWCSEGSHWASEVLSNSNSTPLNSRTAMEEGSERIRPPLLRSSRGRSQTLPSRFNDSVLGTWKNRGIKVEDADSSFEDDNILVEDSVGVSGLGFVKQGKGNNYGFKKSKYYSYPNMDGEELGFDDSGLNNFDQRKLTNSFSTTRTSINGHRSSAVKTESYTSGLSFEGVDLKLDRNAAKRKDIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVKQGMIFPFAEFMGRFQGQTRLYKSKPSDFKMALEEALLAEDGFLDSHMGAEQITNAEAHPNGFVEATSSYVDPEYDSQEEDMRPCAGCGLTLPCKTIKKMKDSNSLAQLYCKLCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWIHAECAKISSRLFKDLEHIDYYCPDCKANFNCKFSASQTCKPKIKSTENSQKPVIPDKVTVVCNGMEGYYIPKLHLVMCKCGSCGVRKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWINENSTQGEVSMQLDQQQVLAFLQEKYEPVYPKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVGFSNHETMEPAFGILKIPPSSFLKTCVICKQSHGSCASCCKCATHFHVMCASRAGYSMELHSMEKNGVQITKKLIYCAFHRLPTPDSVMVIHTPLGVFSPRTSLQNHKGCFRGSRLVSSKNVELLQSSASETNGFEPLSAARCRVYRSFKKADEPIIHLVRGPSRHLLSSIIQLNSYKDSDDSKVFTSFKERLHHLQKTENYRVCFGKSGIHGWGLFARRDIQEGEMVAEYRGEQVRRSVADMREAKYRSEGKDCYLFKISEEVVIDATHRGNIARLINHSCMPNCYARIMSMGAEESRIVLIAKTHVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0200 1044 Gene3D - 235 351 - -
Lele43g0200 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 663 IPR013083 -
Lele43g0200 1044 ProSiteProfiles Post-SET domain profile. 1028 1044 IPR003616 -
Lele43g0200 1044 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1044 IPR025780 -
Lele43g0200 1044 Pfam PHD-zinc-finger like domain 668 780 - -
Lele43g0200 1044 ProSiteProfiles Zinc finger PHD-type profile. 612 663 IPR019787 -
Lele43g0200 1044 ProSiteProfiles Extended PHD (ePHD) domain profile. 666 781 IPR034732 -
Lele43g0200 1044 CDD ePHD_ATX3_4_5_like 669 780 IPR041955 -
Lele43g0200 1044 ProSiteProfiles Zinc finger PHD-type profile. 428 484 IPR019787 -
Lele43g0200 1044 Pfam PHD-finger 627 661 - -
Lele43g0200 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 487 IPR013083 -
Lele43g0200 1044 SUPERFAMILY FYVE/PHD zinc finger 428 489 IPR011011 -
Lele43g0200 1044 SMART set_7 902 1025 IPR001214 GO:0005515
Lele43g0200 1044 SUPERFAMILY Tudor/PWWP/MBT 240 350 - -
Lele43g0200 1044 SMART PWWP_4 247 316 IPR000313 -
Lele43g0200 1044 ProSitePatterns Zinc finger PHD-type signature. 615 660 IPR019786 -
Lele43g0200 1044 CDD PHD_ATX3_4_5_like 614 660 IPR042011 -
Lele43g0200 1044 PANTHER PHD FINGER PROTEINS 12 463 - -
Lele43g0200 1044 MobiDBLite consensus disorder prediction 72 112 - -
Lele43g0200 1044 ProSiteProfiles PWWP domain profile. 249 318 IPR000313 -
Lele43g0200 1044 ProSiteProfiles SET domain profile. 902 1019 IPR001214 GO:0005515
Lele43g0200 1044 SUPERFAMILY SET domain 895 1041 IPR046341 -
Lele43g0200 1044 Pfam PHD-finger 430 483 IPR019787 -
Lele43g0200 1044 CDD PHD_TCF19_like 431 481 - -
Lele43g0200 1044 CDD SET_SETD1-like 891 1040 - -
Lele43g0200 1044 SMART PHD_3 614 661 IPR001965 -
Lele43g0200 1044 SMART PHD_3 725 781 IPR001965 -
Lele43g0200 1044 SMART PHD_3 430 482 IPR001965 -
Lele43g0200 1044 SUPERFAMILY FYVE/PHD zinc finger 613 677 IPR011011 -
Lele43g0200 1044 Gene3D SET domain 879 1044 IPR046341 -
Lele43g0200 1044 FunFam Histone-lysine N-methyltransferase 877 1044 - -
Lele43g0200 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 782 IPR013083 -
Lele43g0200 1044 Pfam PWWP domain 250 345 IPR000313 -
Lele43g0200 1044 SMART PostSET_3 1028 1044 IPR003616 -
Lele43g0200 1044 Pfam SET domain 913 1018 IPR001214 GO:0005515
Lele43g0200 1044 FunFam Histone-lysine N-methyltransferase 664 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0200 Lele-ChrLele43 1807068 1814554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0200 387 455 EF-hand Containing Proteins AT5G28340 59.420 1.05e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele43g0200 zf-HC5HC2H_2 5e-28 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1192 41 20909493 20917015 Lele43g0200 43 1807068 1814554 hybridization