Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0199 ATGGAGGACTCTATTGCCACCACTAAGGCCTACAATCTCTTCGTGAAGCTCTTGGACGGAAAAACCCTAACCCTAAAATTCCCATCTCCTGTTCTTTACGCCAATTACATTAAGGACCGCATTTTCGAGGTTACCAGAATACCCACACAATACCAGCGTCTTGTTACTGGCGTCCAACACCTCAACGGTAGCGAATCTGTAATCTCTTGCTCGCCGGAAGGCGGAGATGTGTTCCCCACCGTCCATCTGCTGCTGCGGCTCGCCGGTGGCAAGGGAGGGTTTGGATCGCTTTTGCGTGGTGCGGCCACTAAGGCTGGGCAGAAGAAGACGAACAACTTCGAGGCTTGCAGAGATATGAGCGGCCGAAGGTTGAGGCACGTGAACGCGGAGAAGAGATTGGAGGAATGGAAGGCGGAGGAGGCGGAGAGGAAGCTGGAGAAGATTGCGGAAGAGTTTTTGAAGAAGCAGGCGAAGAAGGGTAAGAAGGGTGTGGGCGATGGCGAGGCGCACAAATATGTGGCAAAATATAGGGAGGAGTCTGAGCGATGCACTGCTGAGGTTGCCGAGTCGGTGAAGGAGGCTTTGATGTCTATTAATGGCAAGAGAAAGGTTTCACACTTTGCGAAAGACGTCGCAGATGCGAAGAAGATGAAGATATGGATGGGAAAGATGAAATTAAATGAAAGTGATAGTGATGATTCTGATGAGGATGGAAGTGATAACGAAGAAGGAAATGAGAAATCAACTGTATTAAATAATGGGAATGACTCAAACTCAAATAAGGCTGAAGGCAGTTCAGATTCAGTAACTGGTGGGAAACAGGATGGTGAATCTTCCGTGGCAGGCTCAAGTGGAAGTTACTCTGAAGAAGAGAAAGAGACTATTCTAGAAGAAAAAATAGACTCTAGCAATTGTCCTAACATTGAATCTCTCCAGAACATAACGGGCAAATTTGTTGAACCTGTGATATGTGATAAGATGGAAAATGGTGTTACTATGCCTGTTTTGGAATCTGCAGCTTTTGGAATTGATGCTGAAGAAGATGGAAAGCAGGATTCTGGTGAAGCTGACATGCTCGATTCAGCAGTTGCTCAAGCCACAAATTTCATAAGCTTACAGCATGTGGTGGATGCAAGCAAATCAAATGATATTGAAACTGATGGATTGCATGAGGATAAAGCATCATCTCATGAAGAAACTCACACAAGTGCCAGTGCTCAGAAAATAGAGGAGCCTTTGAATTTTGATGCATTTAATTCAGCTGAAGAACTTGAGGTTCTTGGCCTGGAAAGGTTGAAGTCCGAACTGCAGACCCGTGGGTTAAAATGTGGAGGCACATTGCAGGAGCGTGCTGCCAGGCTTTTCCTTCTAAAATCGACTCCACTGGATAAACTTCCTAAAAAGTTGCTTGCCAAAAAATGA 1422 0.4578 MEDSIATTKAYNLFVKLLDGKTLTLKFPSPVLYANYIKDRIFEVTRIPTQYQRLVTGVQHLNGSESVISCSPEGGDVFPTVHLLLRLAGGKGGFGSLLRGAATKAGQKKTNNFEACRDMSGRRLRHVNAEKRLEEWKAEEAERKLEKIAEEFLKKQAKKGKKGVGDGEAHKYVAKYREESERCTAEVAESVKEALMSINGKRKVSHFAKDVADAKKMKIWMGKMKLNESDSDDSDEDGSDNEEGNEKSTVLNNGNDSNSNKAEGSSDSVTGGKQDGESSVAGSSGSYSEEEKETILEEKIDSSNCPNIESLQNITGKFVEPVICDKMENGVTMPVLESAAFGIDAEEDGKQDSGEADMLDSAVAQATNFISLQHVVDASKSNDIETDGLHEDKASSHEETHTSASAQKIEEPLNFDAFNSAEELEVLGLERLKSELQTRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0199 473 MobiDBLite consensus disorder prediction 381 409 - -
Lele43g0199 473 Coils Coil 124 158 - -
Lele43g0199 473 SUPERFAMILY Ubiquitin-like 11 91 IPR029071 -
Lele43g0199 473 Pfam Replication stress response SDE2 C-terminal 397 472 - -
Lele43g0199 473 MobiDBLite consensus disorder prediction 245 289 - -
Lele43g0199 473 MobiDBLite consensus disorder prediction 225 307 - -
Lele43g0199 473 MobiDBLite consensus disorder prediction 381 405 - -
Lele43g0199 473 Gene3D - 4 92 - -
Lele43g0199 473 PANTHER SPLICING FACTOR SF3A-RELATED 12 472 - -
Lele43g0199 473 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 161 IPR024974 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0199 Lele-ChrLele43 1802721 1804880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0199 413 472 C2H2 Transcription Factor Family AT5G06160 51.667 2.14e-10 60.8