Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0196 ATGTCCCGACCAGTCCCCATTTTCTCTCGTATCTTCCCCTTCAAGCTCAAGTACCTGGCGTTGGAGTCTCGTGCTGTACGGAATGAACTACTCGGCGTACGGCGATTCTCGACTCCGTCGTTTGCTGGGAGGGCTGGGTCGAGGTCCGAGTTCAACCGGGGGAGTCGGGATACAGAAAGGGCCAGGTTTTCTAAGAGCTTGATTGAGGATGAGGCTGAACTCAGTGACTGGGTTGACGATTTGAAGACCGATTCCTATCGTGGTCGACTCACCAGCGAAGAGGATGACTCGGATAGGGAGACGGGTGGCGATGGACGGAGGAGTAGAGGACCTGTTTCGATGAAAGGGAGCAGGGAAAATGGCTCGCCTCGGAGGAGAACTCGGGATACATTTGAGTCGTTTTCACGGAATTCTCGTACGAGCAGGAGATTTGAAGACGATGACGATGACGATGAGGATGGAAATGAATTCCGTTCTTCGACAACTGGCAGAGTGTCCGGAGGTCGAAATGTGAAGTCTATCTTGGGGAAGAGAAGGGGTGAGGAGTTGCGAGGAGGGAGAAGGGATGGCGGGAGAAAATCGTATCCGATGAGTGAGGGTGATGCTGATGAAGATGAACAGAGGGCAAAGAAGTTCACGGGGCGCTTTGGAGATCTTATTAGTGAAGAAGATAGTGACGCTGAAGATACTGCGGATGAAGATGGTGATGATGATTTACTGAAGAAGACTTTAGATTCTCAATTGGGTCGAGAAAATGAGCTGAAGAAGAGCAGTCCAACAAGAGGTTCTCCTGAGAGATCTGACAATTATTTAAGTGAGACCAAATTTGATCAATGTTCAATCTCGCCTTTATCATTGAAAGGAGTCAAGGCTGCTGGATATGAGAAAATGACTGTTGTACAGGAGGCAACTCTTCCAGTAATTGTCAGAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGAACTGGAAAAACTGTTGCCTTTTTGCTTCCATCTATTGAAGTTGTTGCAAAGTCACCTCCAATTGGTCGGGATCAAAGGCGACCTCCAATACTTGTGCTCGTCATATGCCCAACTCGGGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACTAAACTACTGAAGTACCACCCTTCCATTGGCGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTTTGGAACAGAAACGCATGCAAGCTAACCCTTGCCAGATCCTTGTCGCCACTCCTGGAAGGCTTAGAGACCATATTGAGAATACAGCAGGCTTTGCAACTCGGCTGATGGGTGTGAAAGTCCTTGTGCTCGATGAAGCTGATCATCTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATCGGGGCAGTTCCTAAACAAAGACAAACTCTTATGTTTTCTGCCACCGTTCCAGAAGAGGTCCGTCAAGTCTGCCATATTGCATTGAGAAGGGATCATGAATTTATCAATACAGTTGAGGAGGGTAGTGAGGAGACACATTCACAGGTTCAACAGATGCATTTAGTTGCTCAGTTAGACAAACATTTCTCCTTGCTCTACGTTCTTCTTAAGGAGCATATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCCATGGTCACAAGACTTGTTGCTGACCTTCTTGGCGAGTTGAAGTTGAATGTGAGAGAAATTCATTCAAGAAAGCCTCAGAGCTATAGAACCAGGGTCTCTGAGGAGTTTCGTAAGTCAAAGGGCCTAATCCTTGTAACTTCAGATGTATCTGCCCGTGGAGTTGATTATCCAGATGTCACTCTGGTTATACAGTTGGGTTTGCCAGCTGATAGAGAACAGTATATCCACCGACTGGGTCGAACGGGGCGGAAGGGTAAAGAAGGGCGAGGCATATTGTTACTGGCTCCTTGGGAAGACTTCTTTTTATCTACTGTAAAGGATTTGCCTATTACAAAAGCTCCAGTACCTTCAACTGATCCTGACACAAAGAAAACGGTGCAAAGGGCTCTATCCCATGTGGAGATGAAGAACAAAGAAGCAGCATATCAGTCGTGGCTTGGTTACTACAATTCCAACAAGAAGGTGGGGAAAGACAAGTACAGGTTAGTGGAGCTTGCAAATGAGTTCAGTAGAAGCATGGGGCTTGATAATCCTCCAGCTATTCCAAAGCTAGTCCTTGGCAAGATGGGACTCAGAAATATACCTGGTTTACGTTCGAAATAG 2229 0.4675 MSRPVPIFSRIFPFKLKYLALESRAVRNELLGVRRFSTPSFAGRAGSRSEFNRGSRDTERARFSKSLIEDEAELSDWVDDLKTDSYRGRLTSEEDDSDRETGGDGRRSRGPVSMKGSRENGSPRRRTRDTFESFSRNSRTSRRFEDDDDDDEDGNEFRSSTTGRVSGGRNVKSILGKRRGEELRGGRRDGGRKSYPMSEGDADEDEQRAKKFTGRFGDLISEEDSDAEDTADEDGDDDLLKKTLDSQLGRENELKKSSPTRGSPERSDNYLSETKFDQCSISPLSLKGVKAAGYEKMTVVQEATLPVIVRGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPIGRDQRRPPILVLVICPTRELASQAAAEATKLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIGAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVEEGSEETHSQVQQMHLVAQLDKHFSLLYVLLKEHIADDVDYKVLVFCTTAMVTRLVADLLGELKLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQLGLPADREQYIHRLGRTGRKGKEGRGILLLAPWEDFFLSTVKDLPITKAPVPSTDPDTKKTVQRALSHVEMKNKEAAYQSWLGYYNSNKKVGKDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0196 742 Pfam Helicase conserved C-terminal domain 522 627 IPR001650 -
Lele43g0196 742 SMART ultradead3 293 506 IPR014001 -
Lele43g0196 742 MobiDBLite consensus disorder prediction 50 65 - -
Lele43g0196 742 Gene3D - 497 721 IPR027417 -
Lele43g0196 742 SMART helicmild6 546 627 IPR001650 -
Lele43g0196 742 MobiDBLite consensus disorder prediction 88 106 - -
Lele43g0196 742 Gene3D - 238 489 IPR027417 -
Lele43g0196 742 MobiDBLite consensus disorder prediction 174 221 - -
Lele43g0196 742 MobiDBLite consensus disorder prediction 236 270 - -
Lele43g0196 742 CDD SF2_C_DEAD 503 636 - -
Lele43g0196 742 MobiDBLite consensus disorder prediction 88 270 - -
Lele43g0196 742 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 488 IPR014001 -
Lele43g0196 742 CDD DEADc_MSS116 281 490 - -
Lele43g0196 742 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 274 302 IPR014014 GO:0003724
Lele43g0196 742 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 669 IPR001650 -
Lele43g0196 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 642 IPR027417 -
Lele43g0196 742 Pfam DEAD/DEAH box helicase 299 476 IPR011545 GO:0003676|GO:0005524
Lele43g0196 742 MobiDBLite consensus disorder prediction 119 145 - -
Lele43g0196 742 MobiDBLite consensus disorder prediction 42 65 - -
Lele43g0196 742 PANTHER RNA HELICASE 234 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0196 Lele-ChrLele43 1773642 1778419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0196 265 655 Eukaryotic Initiation Factors Gene Family AT3G19760 27.027 2.00e-44 163