Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0186 ATGGACAAACGCAGCAGAAATCAAGAGATGACTGAAAGCTCTTACTCTGAAGAGGTGAGCAGCATCGAGTGGGAGTTCATAACCATGTCAGAACAGGAAGAAGATCTCATTTACAGAATGTACAAACTGGTGGGAGACAGATGGAGTCTGATAGCAGGCAGGATTCCGGGTCGAAAAGCTGAAGAGATTGAGAGGTTTTGGATTATGAGACATTCCCAAGTCTTCGCCACCAGAAGAGAAAATGCCTCCAAATGTAAATCCTAA 264 0.4432 MDKRSRNQEMTESSYSEEVSSIEWEFITMSEQEEDLIYRMYKLVGDRWSLIAGRIPGRKAEEIERFWIMRHSQVFATRRENASKCKS 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0186 87 Pfam Myb-like DNA-binding domain 30 68 IPR001005 -
Lele43g0186 87 SUPERFAMILY Homeodomain-like 30 68 IPR009057 -
Lele43g0186 87 Gene3D - 30 87 - -
Lele43g0186 87 CDD SANT 28 67 IPR001005 -
Lele43g0186 87 FunFam MYB-like transcription factor 28 70 - -
Lele43g0186 87 SMART sant 25 73 IPR001005 -
Lele43g0186 87 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 28 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0186 Lele-ChrLele43 1711366 1712767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0186 28 83 MYB Transcription Factor Family AT5G52600 51.786 2.91e-16 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele43g0186 Myb_DNA-binding 6.6e-07 CL0123