Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0104 ATGTCGCTTCTCACTTCTCCTCCCTCTTCCTTCCTCATACCCTTCACTTTCTTCTTCCTCTGGCTCCTCTCTTTTTCCTCTGCTCGAGCAAATTCTTCCGGCAGAGGCAGGAAGCTGCAAGAGAACCGTGTTCTGTTGAGAGGAAACGAGACAAAATCGCGCTTGGCTTCTTCAGCTTCAATGGCGGTGAACCAAATTATTGCTTGGCCATTCGATATGGGGAATCGCATTGACAATCGCTATCGCCAAGTCTTAGTTTCGCTTTTCCGTGATTTTGAAGTATCGTGTCAGTGGTGTGAAGCTTTAGCTGGTAAGCTCCGGTTCTGTTGCGATCGAGTTTCTTATTGGTTTTTGAAAGAGAATTGCCCCCGACTTACTTCCTCAATGCTTGGTAATGGGAAATCAGTGGATTTCTATAAGCTCTTCAAGGTTGTTAAGGAGAACGGTGGGTATGATGCAGTCTCCAAAAACCGTTTATGGGATATGGTGGGTGAACAATCTGGGTTGGGCACGAGCATTGGTTCGTTTGTGCAAGTGATTTACAATAAGTACTTGATTACTTTAGAGATATGGCTAAAGCAAGCTGCTGATAATAGGGTCTCTGACTGTAGTCTGGAGTTTAACAGAGTTGATTTTGGCAGGCATTTGATGGAGATGCACGCAGAATTTGAGGGTTCCTTGTCGGATTGTACTGATGAAGAGTTGGGAGATGAGATGTGTCAACGTTCTGACTTTAAAACTGAATATAAACGCCAGGATGGTGAGGTGTTGTTCGATGCTAAGGGAGTGAAGAGCAAGTCTGGAGGGGCCAAAAAAGTTCAGAATGGAGGATTTATTGATTTGAATATACCAGGGTTTGAGTTGAAAGAAGTCACTACAGCAACAACAACAATTGAATTGAATGGATTCAGTCCAGGAAATTTGTGCATTGTCAGTGAGGTAAACAAAATGCCCATATTATCGGATGGAGGCAAGCGATGTGCCAATGATGATGTTTTGGTGTTGGACCCATCTGATGTAGATCCAGAGAGCTTTAACCGTAAAAGGAAGAGGGAGTCTATGCAGGGAATGCTAAGCTGGTTGTCTGGCATTGCAAAGAATCCATGTGATCCCGTTGTTGATTCAATACCTGAAAAATCAAAGTGGAGGTCTCACAGCAATGAGAAGGTCTGGAAGCAGGTTTTGTTGTTTCGGGAGGATGTTTTTTTAAAGCGACATGCTGGGTCAAGCAGTGAACAACTGAATTGGCAGAGACAAAAGATGCATCCATCCATGTACGAAGATATCCTTGAGGTGACATACAACCTTAGGGAGAGGTGTAACTGTACGAAGAAGCTTTTATTTGAAAAATCTAGGTCTGTTAGAGTCTCTTCAGATTCTTCCATGGAAACCAAGGGTAATCTGGAGAGAACCTGTAGTCCTCACAATGAAGATTCTGCCGAGGAAAAACTGCCTGATTCCTCTACTGCACCATCAGGTCTTGACAATTGTGGCATAGTTCCCATCCCTCTGGGGCCAAGTCATCAAGCTAAAGTACCAGAATGGACTGGCATGACTTCTGAAAGTGATTCCAAGTGGTTGGGGACCCGAATATGGCCATCAGAGAAAGTGAATCACAGACTCCTGATTGAGAGGGACCCCATTGGCAAGGGAAGACAAGATTCATGTGGCTGCCAAGTACCAGGTTCTGTTGAATGTGTCAGATTTCATGTTGCTGAGAAAAGGGCTAAGGTGAAGCTGGAATTAGGTGTGGCTTTTTACCTGTGGAATTTAGACAAGGTAGGTGAAGATGTTAGGCAATCATGGACAGCGGATGAAGAGAAGAAGTTTAGGGATGTGGTGCGATCAAATCCTCCATCACTAGAGAGATACTATTGGGATCATATTTTCAAGTCATTTCCTAAGAAGACAAGGGAAGATTTAGTTAGCTACTATTTCAATGTCTTTCTTTTGCAGCGTCGAGGATATCAGAACAGGAATACTCCACATGAAATTGATAGTGATGATGAAGAATCAGAATTTGGACCTTTGAGGAATGTTTTTGGACAGCTAGAACTGAAGCCATCCTGTTCCATCTTGCTAACCCCCAAAAAGTCTCAGACAAAGAACAAATAG 2115 0.435 MSLLTSPPSSFLIPFTFFFLWLLSFSSARANSSGRGRKLQENRVLLRGNETKSRLASSASMAVNQIIAWPFDMGNRIDNRYRQVLVSLFRDFEVSCQWCEALAGKLRFCCDRVSYWFLKENCPRLTSSMLGNGKSVDFYKLFKVVKENGGYDAVSKNRLWDMVGEQSGLGTSIGSFVQVIYNKYLITLEIWLKQAADNRVSDCSLEFNRVDFGRHLMEMHAEFEGSLSDCTDEELGDEMCQRSDFKTEYKRQDGEVLFDAKGVKSKSGGAKKVQNGGFIDLNIPGFELKEVTTATTTIELNGFSPGNLCIVSEVNKMPILSDGGKRCANDDVLVLDPSDVDPESFNRKRKRESMQGMLSWLSGIAKNPCDPVVDSIPEKSKWRSHSNEKVWKQVLLFREDVFLKRHAGSSSEQLNWQRQKMHPSMYEDILEVTYNLRERCNCTKKLLFEKSRSVRVSSDSSMETKGNLERTCSPHNEDSAEEKLPDSSTAPSGLDNCGIVPIPLGPSHQAKVPEWTGMTSESDSKWLGTRIWPSEKVNHRLLIERDPIGKGRQDSCGCQVPGSVECVRFHVAEKRAKVKLELGVAFYLWNLDKVGEDVRQSWTADEEKKFRDVVRSNPPSLERYYWDHIFKSFPKKTREDLVSYYFNVFLLQRRGYQNRNTPHEIDSDDEESEFGPLRNVFGQLELKPSCSILLTPKKSQTKNK 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0104 704 SMART sant 598 651 IPR001005 -
Lele43g0104 704 SMART ARID_2 89 189 - -
Lele43g0104 704 ProSiteProfiles ARID domain profile. 103 193 IPR001606 GO:0003677
Lele43g0104 704 SMART ELM2_2 502 553 IPR000949 -
Lele43g0104 704 SMART bright_3 110 194 IPR001606 GO:0003677
Lele43g0104 704 SUPERFAMILY ARID-like 132 201 IPR036431 GO:0003677
Lele43g0104 704 MobiDBLite consensus disorder prediction 470 484 - -
Lele43g0104 704 Gene3D - 110 202 IPR036431 GO:0003677
Lele43g0104 704 MobiDBLite consensus disorder prediction 458 490 - -
Lele43g0104 704 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 105 701 - -
Lele43g0104 704 CDD SANT 601 649 IPR001005 -
Lele43g0104 704 Pfam ARID/BRIGHT DNA binding domain 126 188 IPR001606 GO:0003677
Lele43g0104 704 CDD ARID 117 189 - -
Lele43g0104 704 Pfam Myb-like DNA-binding domain 599 648 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0104 Lele-ChrLele43 1154368 1162704 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele43g0104 ARID 5.3e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1289 41 21611669 21614250 Lele43g0104 43 1154368 1162704 hybridization
Lele42g1249 42 24554798 24557414 Lele43g0104 43 1154368 1162704 hybridization