Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0102 ATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTATAGACAGTTCATCTGTCAGCAAGTATTACAGCCTTGCTCATGCTGTGAATGAAAAGGTCATAAGGCAGCCATCTATGTTACGAGCTGGAACCTTGAGAGACTATCAGCTTGTTGGCTTGCAGTGGATGCTTTCATTGTACAACAACAAGTTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACCGTGCAGGTTATGGCCTTGATTGCCTACTTGATGGAATTTAAAGGAAATTATGGTCCGCATCTTATAATTGTTCCAAATGCAGTTCTGGTTAACTGGAAGGAGGTTTCTGCCATGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGGTCCAAATTGTCAAAAATTGATTGGAAGTACATCATAATTGATGAAGCACAAAGAATGAAGGATAGGGATTCAGTTCTAGCTCGTGATCTTGATAGATACCGTTGTCAGAGACGTCTTCTTCTGACAGGAACACCATTGCAGAATGATCTGAAGGAGCTCTGGTCACTTTTAAATTTACTTCTTCCAGAGGTTTTTGATAATCGAAAAGCATTTCATGATTGGTTTTCAAAGCCTTTTCAAAAGGAAGATCCTACTCAAATTGTAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATCATTATTCATAGACTCCATCAGATTCTTGAGCCTTTCATGCTTAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTACCACCAAAGGTCTCCATAGTTTTACGATGTAAAATGTCAGCTATTCAGAGTGCCATTTATGACTGGATCAAATTCACGGGTACCCTTCGGCTTGATCCTGAGGATGAGAAGCGTAGAGTTCAAAAGAATCCAGTTTACCAGGTGAAGCAGTATAAAACTTTAAATAATAGGTGCATGGAGCTGCGTAAGACCTGCAATCATCCATTACTTAATTACCCATACTTCCATGACTTATCTAAAGAGTTCCTTCTGAAATCTTGTGGGAAATTGTGGATCCTTGATAGGATCCTTATTAAACTGCAACAAACTGGACATCGAGTTCTGCTGTTTAGTACTATGACAAAGCTTCTAGACATTATAGAAGAATACCTGCAATGGCGACGACTTGTTTACAGAAGAATTGATGGGACAACTAGTTTAGAAGACCGTGAAGCAGCTATAGTGGACTTTAATAGCCCAGATTCAGACTGTTTCATCTTCTTGCTTAGTATCAGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCAGACACAGTCATCATATATGATCCTGATCCAAACCCAAAAAATGAGGAGCAGGCAGTTGCAAGAGCTCATCGCATTGGACAGACTAGAGAAGTCAGGGTTATCTACATGGAAGCTGTTGTCGACCAAATTCCTAGCCATCAAAAAGAGGATGAACATAGTAGTGGGGGCACTGTCAATTTGGAGGATGAACTTGCAGGTAAGGATCGTTATATGGGATCCATTGAGAGCCTCATTAGGAAGAATATTCAACAATACAAGATTGATATGGCTGATGAGGTCATCAATGCTGGACGTTTTGATCAAAGAACTACACATGAAGAGAGACGTATGACTTTAGAGACATTATTACATGATGAAGAAAGGTATCAGGAAACTGTCCATGATGTTCCCTCACTACAGGAGGTGAATCGCATGATTGCCAGGAGTGAAGAAGAACTCGAGATGTTTGATCAAATGGATGACGAACTGGATTGGACTGAGGAGATGACTCGGTATGATCAGGTGCCTAAGTGGCTTAGAGCCAGCACAGGAGAAGTCAATGCCACTATTGCCGCTATATCAAAAAGACCTTCAAAGAACACTTTCTTGGGTGGTAGTATCGCTGTGGAATCTGGTGAAATGGGTTCCGATGCATCTGCAAAATCTGAAAGGAGAAGAGGTCGACCCCAGGGGAAAAAACATCCTAGTTATAGAGAGTTAGAAGATGAAAATGGAGAATCCTCTGAAGCAAGTTCTGAAGAAAGAAATGGATATTCTGCAAATGAAGGGGAAATGGGGGAATTTGAAGATGATGGGTATAGTGGTGCGGATGGAGCTCAACCAAATAATAAAGATCAAATGGATGATGGTGCAGGATATGAATTTCCTCGTTCCTCGGAAAGCATAAGAAACAGTCATATGGTTGAAGAAGCTGCTTCCTCAGGATCGTCCTCAGACAGTCAAAGATTGACACAGACTATTCCTTCAGCTTCCTCTAAGAAATTTGGTTCCCTCTCTGCATTAGATTCTAGGCCAAGTTCCATTTCCAAAAGGATGACAGATGACTTAGAGGAAGGGGAAATTGCGGTATCTGGTGATTCTCACATGGATCACCAGCAATCTGGCAGTTGGATTCATGATCGTGATGAAGGAGAAGATGAACAAGTTTTGCAGCCCAAATTTAAACGTAAACGCAGTCGACGTGTTCGACCCCGTCATACTACTGACAGGTTTGAGGAAAAGTCTAGCGGTGAGATGGCATCTCTTCAACATGGAGAATCAGCTCATTTGACTGTCCAAGATGACCATAAATATGTAAAATCACGTGGAGAATTTAATGCTGCCAGGCATGATCAGAATGAGTTCAAAAATAAGCGAAGTTTGCCTTCAAAGAGAGTAACTAATAAATTGCATGGTTCACCTAAATCTGGTAGATTGAATTGTATTTCTGCCCCTTCAGAGGATGGCGGTGAACAACTCAGAGAAAAGTGGGAGGGTAAGCGAATCAATTCAAGTGGGTCTTCAGCAATTGGTGCTAGAATGTCTGAAATAGTCCAGAGAAAGTGCAAGAATGTAATTAGCAAGTTTCAAAGGAGAATAGATAAGGAAGGTCATCAAATTGTACCTTTGCTTACTGACTTGTGGAAGAAGAATTCTGGACACACTGGTGGATGCGGGAATAATTGGTTGGACATACAGAAGATTGATCAGCGGATTGATAGGTTTGAATATAACGGAGTATTGGAGCTTGTGTGTGATGTGCAGTTCATGTTGAAGTGTGCAATGGATTTTTATGGGTTCTCACATGAGGTAAGATCTGAAGCAAGGAAGGTCCATGATCTCTTCTTTGATATCTTGAAAGCTGCATTTCCGGATACGGACTTCCAAGGGCCAAGAAGTGCACTTTCTTTTGCTGCACCGACTTCTGTCAGTACTCTAACATCCCCGAGGCAATTGGCTGTTAGCCAAAGCAGGAGACACAAGTTGATAAATGACGTGGAAAATGATCCAAGCCCTTCACAGAAGCAGCTGCATCGGGGTTTTATTCCAAGTGGTGAAAGCACCAGGATCAGAGTCCAACTGCCACCAAAGGATTCAAGAACTGGAACAGCTTCTGGTACCAGAGAGCAAATTCAGCAGGATGATTCTCCGCTACTCACTCATCCAGGTGAACTGGTAGTATGCAAGAAGAGAAGAAATGAGAGGGACAAATCCTCAGGGAAGACTAGGGGTGGTCCTGTTTCACCACCTAGCTCTGGTCCTGCTATAAGAAGTCCGAGACCAAGTTCAGGTTCAAAGGATGCTGGACTAGCTCAACAGCCTGCTCAAGGGTGGACACGCAAGCCATCTCAACAAGCAAACGGGTCTGGTGGTTCGGCTGGTTGGGCGAATCCTGTGAAGCGGTTGAGGACGGATTCTGGGAAAAGGAGACCGAGCCATCTATAG 3717 0.4259 MIRNRFMEMNAPIDSSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKEVSAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEDPTQIVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAIQSAIYDWIKFTGTLRLDPEDEKRRVQKNPVYQVKQYKTLNNRCMELRKTCNHPLLNYPYFHDLSKEFLLKSCGKLWILDRILIKLQQTGHRVLLFSTMTKLLDIIEEYLQWRRLVYRRIDGTTSLEDREAAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVRVIYMEAVVDQIPSHQKEDEHSSGGTVNLEDELAGKDRYMGSIESLIRKNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEELEMFDQMDDELDWTEEMTRYDQVPKWLRASTGEVNATIAAISKRPSKNTFLGGSIAVESGEMGSDASAKSERRRGRPQGKKHPSYRELEDENGESSEASSEERNGYSANEGEMGEFEDDGYSGADGAQPNNKDQMDDGAGYEFPRSSESIRNSHMVEEAASSGSSSDSQRLTQTIPSASSKKFGSLSALDSRPSSISKRMTDDLEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQPKFKRKRSRRVRPRHTTDRFEEKSSGEMASLQHGESAHLTVQDDHKYVKSRGEFNAARHDQNEFKNKRSLPSKRVTNKLHGSPKSGRLNCISAPSEDGGEQLREKWEGKRINSSGSSAIGARMSEIVQRKCKNVISKFQRRIDKEGHQIVPLLTDLWKKNSGHTGGCGNNWLDIQKIDQRIDRFEYNGVLELVCDVQFMLKCAMDFYGFSHEVRSEARKVHDLFFDILKAAFPDTDFQGPRSALSFAAPTSVSTLTSPRQLAVSQSRRHKLINDVENDPSPSQKQLHRGFIPSGESTRIRVQLPPKDSRTGTASGTREQIQQDDSPLLTHPGELVVCKKRRNERDKSSGKTRGGPVSPPSSGPAIRSPRPSSGSKDAGLAQQPAQGWTRKPSQQANGSGGSAGWANPVKRLRTDSGKRRPSHL 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0102 1238 MobiDBLite consensus disorder prediction 829 843 - -
Lele43g0102 1238 Gene3D - 14 111 IPR038718 -
Lele43g0102 1238 MobiDBLite consensus disorder prediction 1122 1141 - -
Lele43g0102 1238 MobiDBLite consensus disorder prediction 722 771 - -
Lele43g0102 1238 MobiDBLite consensus disorder prediction 1088 1238 - -
Lele43g0102 1238 MobiDBLite consensus disorder prediction 637 848 - -
Lele43g0102 1238 MobiDBLite consensus disorder prediction 871 916 - -
Lele43g0102 1238 FunFam Brahma1 937 1058 - -
Lele43g0102 1238 Pfam Helicase conserved C-terminal domain 345 457 IPR001650 -
Lele43g0102 1238 Pfam SNF2-related domain 114 323 IPR000330 GO:0005524|GO:0140658
Lele43g0102 1238 Coils Coil 563 583 - -
Lele43g0102 1238 MobiDBLite consensus disorder prediction 871 885 - -
Lele43g0102 1238 FunFam ATP-dependent helicase BRM 256 466 - -
Lele43g0102 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 246 IPR027417 -
Lele43g0102 1238 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 524 IPR001650 -
Lele43g0102 1238 Gene3D - 112 245 IPR038718 -
Lele43g0102 1238 Gene3D - 256 579 IPR027417 -
Lele43g0102 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 587 IPR027417 -
Lele43g0102 1238 MobiDBLite consensus disorder prediction 1149 1165 - -
Lele43g0102 1238 MobiDBLite consensus disorder prediction 1091 1105 - -
Lele43g0102 1238 CDD SF2_C_SNF 342 467 - -
Lele43g0102 1238 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 193 IPR014001 -
Lele43g0102 1238 SUPERFAMILY Bromodomain 988 1050 IPR036427 GO:0005515
Lele43g0102 1238 PANTHER SNF2/RAD54 HELICASE FAMILY 29 718 - -
Lele43g0102 1238 SMART helicmild6 373 457 IPR001650 -
Lele43g0102 1238 MobiDBLite consensus disorder prediction 1189 1216 - -
Lele43g0102 1238 Gene3D - 937 1080 IPR036427 GO:0005515
Lele43g0102 1238 MobiDBLite consensus disorder prediction 797 817 - -
Lele43g0102 1238 SMART ultradead3 40 201 IPR014001 -
Lele43g0102 1238 Pfam SNF2-related domain 47 109 IPR000330 GO:0005524|GO:0140658
Lele43g0102 1238 SMART bromo_6 939 1048 IPR001487 GO:0005515
Lele43g0102 1238 MobiDBLite consensus disorder prediction 772 789 - -
Lele43g0102 1238 CDD Bromodomain 988 1043 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0102 Lele-ChrLele43 1136799 1143252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0102 65 482 RAD5 or RAD16-like Gene Family AT1G02670 25.338 2.73e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele43g0102 SNF2_N 9e-42 CL0023