Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0070 ATGAACAATAGAGCTAGATATCCACCTGGGATTGGCGTAGGTCGAGGGGGAGGTATGAACTGGAACCCTGCGTTTCAACCGCGACCTTCTCAGCAACAGTATGTGCAGAGGCATATAGTGCAGAATCAACAGCAGTATCAACATCATCAACAGCAACATCAGCAGTTACAACAGCAGCAGCAACAACAACAACAATGGCTTAGAAGAACCCAATTGAGTGTTGCTGATTCTAACGTAGCTGACGAGGTCGAGAAGACTGTGCAGTCTGAAGCCATTAATTCAAGTTCTCAAGATTGGAAGGCAAGATTAAATATACCACCGCCTGATACTCGCTATAGGACTGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAGGAAGAAAGTATCCCAATTGCCCTTACTGGTAGCGACATTCTTGCTAGAGCAAAAAATGGAACGGGGAAAACAGCTGCTTTTTGCATTCCTGCCCTAGAAAAAATTGATCAGGATAACAATGTTATTCAAGTCGTTATACTGGTTCCAACACGTGAGTTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTGGGAAAGCATCTGGAAATTCAAGTCATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATCATGCGTTTATATCAACCTGTTCATTTACTTGTTGGAACTCCAGGAAGAATATTAGATCTTACAAAGAAGGGTGTCTGCATTTTGAAAGACTGTAGTATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCACCAGAGTTCCAACCTTCGATAGAGCAATTGATTCATTTCCTGCCCCCAACCCGTCAAGTCCTGATGTTTTCAGCTACTTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATTTCTGCAGAAACCGTATATCATTAACCTTATGGATGAGTTAACTCTGAAAGGTATTACACAATTCTATGCATTTGTGGAGGAGAGACAGAAAGTCCACTGCCTCAATACGCTTTTCTCTAAGCTGCAAATAAATCAGTCAATTATCTTCTGCAATTCAGTGAATCGGGTCGAGCTCCTTGCTAAGAAAATCACAGAACTTGGCTATTCATGCTTCTATATCCATGCGAAGATGTTGCAAGATCATCGTAACAGAGTATTTCATGACTTCCGCAATGGTGCTTGTAGAAATCTTGTTTGTACTGATCTTTTTACCAGGGGAATAGACATTCAAGCGGTTAATGTGGTCATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTCTAGCAGTTAACTTGATCACCTATGAGGATCGTTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACACATTGATCAGGCAATTTATTGCCGGTGA 1494 0.4116 MNNRARYPPGIGVGRGGGMNWNPAFQPRPSQQQYVQRHIVQNQQQYQHHQQQHQQLQQQQQQQQQWLRRTQLSVADSNVADEVEKTVQSEAINSSSQDWKARLNIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLEIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFLPPTRQVLMFSATFPVTVKDFKDRFLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0070 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 494 IPR001650 -
Lele43g0070 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 477 IPR027417 -
Lele43g0070 497 FunFam ATP-dependent RNA helicase DDX6 104 327 - -
Lele43g0070 497 SMART ultradead3 142 338 IPR014001 -
Lele43g0070 497 Coils Coil 39 59 - -
Lele43g0070 497 SMART helicmild6 374 455 IPR001650 -
Lele43g0070 497 MobiDBLite consensus disorder prediction 89 114 - -
Lele43g0070 497 Gene3D - 328 497 IPR027417 -
Lele43g0070 497 Pfam DEAD/DEAH box helicase 148 312 IPR011545 GO:0003676|GO:0005524
Lele43g0070 497 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 270 278 IPR000629 -
Lele43g0070 497 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 58 496 - -
Lele43g0070 497 CDD SF2_C_DEAD 335 464 - -
Lele43g0070 497 CDD DEADc_DDX6 125 325 - -
Lele43g0070 497 Gene3D - 90 327 IPR027417 -
Lele43g0070 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 324 IPR014001 -
Lele43g0070 497 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Lele43g0070 497 Pfam Helicase conserved C-terminal domain 349 455 IPR001650 -
Lele43g0070 497 MobiDBLite consensus disorder prediction 1 31 - -
Lele43g0070 497 FunFam ATP-dependent RNA helicase DDX6 328 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0070 Lele-ChrLele43 929017 933118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0070 125 494 Eukaryotic Initiation Factors Gene Family AT3G19760 39.247 1.92e-96 296