Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0068 ATGGGCCCTTTGTTTCTAGTCCGTTTACTTCACTTATATTCAGAGGGGTGGTTATTTTCTGACTATGTGCAGGTCCAGGAAGAAGAACAATTAGAGTTCCTGGACTCGCACATAGTTTATGAACTAGGTTGGAATTGGGATGACTTAAATCAGCTAGCACAAGGATCTCTGGCTGGGCACCTTCTAGAGTGTGGCTGCCAACTCACTTGTGGATATTTCATGCATCCAGGAGACAAGAATCGAGATATGCCCTTTGAGCAACTACTGGATTTATCACCTCCTTATGCTGACATTTGTTTTGATGGACAAGTGTGTGTAGCTAAGGCGGAAGGTAGTGGTGGAGTTCTAAATTTTAGTACATGTGCTGAACAACTTCTTTCTGAGATTGGAGATCCTGGTGCTTATGTGACCCTGGATTTGTTAAGTTTGGTATCATGTTTTTCATATTTTTTGACAGAAAGAAGGTTTCATTATGATCAGAAGGTGGAATATGGGAAAATAGTTCATCTTGTTCTTGAACAGGTTATTGATTTTCAGAATATTTCTTTCCTTCCATATTCAAGCTGTAGAGTTCTCCGTATGGGGGCAAAACCATCTACTAAACCAGTTCCTGATGAACTTCTGCAGTTGGTTCCAAAGGAGTGCGGATGGAAGGTATGGGGAGAGATATCTTATGGTGGCTATGAATGTGTAAAACGTGCTAAAGCTGCTGAATTTTTGGGTAGGCGTGAAGATGTTTTCTGGCGACTTGGTGTGAAGAGCTGCAGGACAAGCAGTTCAGATAAAGTAGCCATTCCTGAATGCAATCTGAATCATACATTGACATGGCCACCACATATGCAGGAAATGGAAGATACAAATGGAGGAACGATAATGTTAAGAGAAATGGCATTCACAGGAACATTGGATAAATGCAATGCATGTGATAAGACTGTTTATGTGGTAGATCTGTTGTCTCTTGAGGGAGTTCCCTACCATAAATCTTGCTTTAGATGCAGTCACTGCAAGGGCTCCCTTTCGATGAGTAGCTACTCTTCAATGGATGGTGTTCTGTATTGCAAGCCACATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCACGCAGCAAAGTCTTCTGAAAAATCACATGACACGAGCAAGAACTCAAACAAACTCTCTTCATTGTTCAGCGGAACACAAGACAAATGTGCAGCTTGCACTAAAACAGTGTATCCTCTAGAGAAGGTGACACTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTGACACATTCCTCCTATGCTGCTCTTGATGGTGTACTGTATTGCAGGCACCACTTTGCTCAGCTTTTCATGGAGAAAGGTTCTTACAACCATGTCAAGCAAGTCACGGCTCACAAAAAGAACTCTGCTTCCCCTGATGACCACCCTGAAGATGGCTCTCACCCAGGTGATGAACATCCATCTCAGGACCAGGATGAAACTAAACATGAAGAAGATGAAGATGAACAATCTTGA 1536 0.4238 MGPLFLVRLLHLYSEGWLFSDYVQVQEEEQLEFLDSHIVYELGWNWDDLNQLAQGSLAGHLLECGCQLTCGYFMHPGDKNRDMPFEQLLDLSPPYADICFDGQVCVAKAEGSGGVLNFSTCAEQLLSEIGDPGAYVTLDLLSLVSCFSYFLTERRFHYDQKVEYGKIVHLVLEQVIDFQNISFLPYSSCRVLRMGAKPSTKPVPDELLQLVPKECGWKVWGEISYGGYECVKRAKAAEFLGRREDVFWRLGVKSCRTSSSDKVAIPECNLNHTLTWPPHMQEMEDTNGGTIMLREMAFTGTLDKCNACDKTVYVVDLLSLEGVPYHKSCFRCSHCKGSLSMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFHAAKSSEKSHDTSKNSNKLSSLFSGTQDKCAACTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGSYNHVKQVTAHKKNSASPDDHPEDGSHPGDEHPSQDQDETKHEEDEDEQS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0068 511 Gene3D Cysteine Rich Protein 395 465 - -
Lele43g0068 511 FunFam LIM domain and actin-binding 1 395 465 - -
Lele43g0068 511 CDD LIM2_SF3 401 461 - -
Lele43g0068 511 FunFam LIM domain and actin-binding 1 299 369 - -
Lele43g0068 511 Pfam Acyclic terpene utilisation family protein AtuA 38 140 IPR010839 -
Lele43g0068 511 MobiDBLite consensus disorder prediction 470 511 - -
Lele43g0068 511 ProSiteProfiles LIM domain profile. 399 459 IPR001781 -
Lele43g0068 511 Gene3D Cysteine Rich Protein 300 367 - -
Lele43g0068 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 427 466 - -
Lele43g0068 511 PANTHER PROPIONYL-COA CARBOXYLASE 174 242 - -
Lele43g0068 511 MobiDBLite consensus disorder prediction 474 500 - -
Lele43g0068 511 SMART lim_4 304 356 IPR001781 -
Lele43g0068 511 SMART lim_4 400 452 IPR001781 -
Lele43g0068 511 ProSitePatterns LIM zinc-binding domain signature. 305 339 IPR001781 -
Lele43g0068 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 393 426 - -
Lele43g0068 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 331 371 - -
Lele43g0068 511 Pfam LIM domain 401 456 IPR001781 -
Lele43g0068 511 Pfam LIM domain 305 360 IPR001781 -
Lele43g0068 511 ProSiteProfiles LIM domain profile. 303 363 IPR001781 -
Lele43g0068 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 297 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0068 Lele-ChrLele43 917594 923191 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele43g0068 AtuA 9.5e-28 No_clan