Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0042 ATGGGCAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTGACTTTCTCAAAAAGAAGGAGCGGCCTCATGAAGAAAGCTTATGAACTGTCAGTGCTTTGTGATGCTGAGGTTGCTCTTATCATTTTCTCTGGTCGTGGCAAGCTCTACGAATTCGGAAGTGCTGGCATTACCAAAACCCTGGAACGATACCAGAGGTGCACTTTTACTTCTCAAGACACCAATGTTGTTGAGCTTGAAACACAGAGCTGGTGCCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAGAGGACTCAAAGGCATTTGCTTGGGGAAGATCTGGGACCACTGAATGTGAAAGAGCTTCAGAATCTAGAGAAGCAGCTTGAAGGAGCTCTAGCTCAAGCCAGGCAAAGGAAGACAGAGATCATGATGGAACAAATGGAAGATCTACGCAGGAAGGAACGGCATCTGGTAGACATGAATCAGCAACTGAGACTGAAGGTGGAGGCAGAGGGATATAATGTGAAGAACATAGAGAGCTTATGGAGCAGTCATTGTGAGTCATCAGCTGCAGCTGCCTTCCAACCTCCCCATAACCCATTCCTCCATGTCGGTATGTATGTATGTATGTATGTATGTATGTACCATCATCATCAGTATGTTGAAGCAGAGACATCTGATCATAATGCATCCAAGCCCAATAACATGCTTGCTGAAACCAACTTCATGCAGGGCTGGCTTCTTTGA 753 0.4555 MGRGRVELKRIENKINRQVTFSKRRSGLMKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGITKTLERYQRCTFTSQDTNVVELETQSWCQEVSKLKAKYESLQRTQRHLLGEDLGPLNVKELQNLEKQLEGALAQARQRKTEIMMEQMEDLRRKERHLVDMNQQLRLKVEAEGYNVKNIESLWSSHCESSAAAAFQPPHNPFLHVGMYVCMYVCMYHHHQYVEAETSDHNASKPNNMLAETNFMQGWLL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0042 250 FunFam MADS-box transcription factor 1 13 87 - -
Lele43g0042 250 Coils Coil 120 143 - -
Lele43g0042 250 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Lele43g0042 250 Coils Coil 145 169 - -
Lele43g0042 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele43g0042 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Lele43g0042 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele43g0042 250 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele43g0042 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele43g0042 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele43g0042 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele43g0042 250 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lele43g0042 250 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lele43g0042 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele43g0042 250 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele43g0042 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0042 Lele-ChrLele43 754967 757857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0042 1 250 MADS-box Gene Family AT2G45650 58.712 3.40e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele43g0042 K-box 1.6e-30 No_clan