Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0041 ATGGTACGAGGGAAAACTCAGATGAGGCGTATAGAGAACGCCACGAGCAGGCAAGTGACCTTCTCAAAGCGCCGTAATGGGCTTCTCAAGAAGGCCTTTGAGCTCTCAGTGCTTTGTGAAGCTGAGGTTGCTCTCATCATCTTCTCTCCCAGAGGCAAGCTTTATGAATTTGCTAGCTCCAGCTTGCACGAAACAATTGAACGCTACCGCAAGCATAGCAGGGATACTCAAGCAGCCACCAGATCTGGTGAACAAAATATGCTGCATTTGAAGCAAGAAGCTGCAAGCATGGTGAAGAAAATTGAGCTTCTTGAACTTTCAAAACGGAAACTCTTGGGGGAGGGTTTGGGGTCATGCTCCATACAAGAGTTAAACCAGATAGAACAGCAGTTGGAGAAGAGTGTGAGCACCATTCGAGCAAGAAAGAATCAGGTTTACAACGAACAAATCGAGCAACTAAAAGCAAAGGAAGAAGTCCTTGAAGCTGAAAATGCAAGGCTCTTTGAGAAGTGTGGCATACAGCTACAGCAAGCAACAAATGGTGAGCAGCAGAGAGAAAGCCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAGGTGGAAACTGAGTTATTCATTGGGTTACCGGAAACCAGAGCAAGACGAAGCTTTCTGCCCCCTCTACCTCCAAGGTCTAGTTGA 678 0.4676 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSPRGKLYEFASSSLHETIERYRKHSRDTQAATRSGEQNMLHLKQEAASMVKKIELLELSKRKLLGEGLGSCSIQELNQIEQQLEKSVSTIRARKNQVYNEQIEQLKAKEEVLEAENARLFEKCGIQLQQATNGEQQRESQPYAESSPSSEVETELFIGLPETRARRSFLPPLPPRSS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0041 225 MobiDBLite consensus disorder prediction 178 200 - -
Lele43g0041 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele43g0041 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele43g0041 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele43g0041 225 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Lele43g0041 225 FunFam MADS-box transcription factor 1 13 84 - -
Lele43g0041 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele43g0041 225 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele43g0041 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Lele43g0041 225 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Lele43g0041 225 Coils Coil 121 141 - -
Lele43g0041 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele43g0041 225 Coils Coil 143 170 - -
Lele43g0041 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele43g0041 225 MobiDBLite consensus disorder prediction 178 204 - -
Lele43g0041 225 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele43g0041 225 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Lele43g0041 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0041 Lele-ChrLele43 743701 752055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0041 1 156 MADS-box Gene Family AT2G45660 75.641 1.51e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele43g0041 K-box 1.2e-25 No_clan