Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0030 ATGGGGGTGGGAGGAAATTTCTGGGATTTGCTAAAGCCATATGCGCGAGCCGAAGGTTTCGATTTCTTAAGGGACAAGCGAGTCGCTGTGGACCTCTCCTTCTGGATTATCCAGCACCAGACTGCTATCAGGGCCAATGCTCGGAAACCCCATCTACGCCTTACCTTCTTCCGTACCATCAATCTTTTCTCCAAGTTTGGAGCATATCCAGTCTTCGTGGTAGATGGGACCCCATCGCCTTTGAAATCACAAGCCAGGATTTCAAGATTTTTCCGTTTTTCTGGCATTGAACTACCAACTTTTCCGGTAGCTGAAGAAAGTGTTCCCGTTGAGAGGAACCGTGAATTTTCTAAAAGTGTTCAGGAATGTGTGGAACTTGTGGAGTTACTTGGAATGCCTGTACTATATGCTAAAGGAGAGGCAGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATGTAGATGCATGCATCACATCTGACAGTGATGCATTCCTATTTGGCGCGAAATGCATTATAAAAAGCTTCTGTTCTAATGCCAAAGTAGCTTTTGAATGCTACAATACGGAAGATATTGAAGATGGTCTTGGGTTGAAGAGGAAACACCTCATAGCTATTTCTCTTCTCGTTGGAAATGATCATGATTTAACAGGTGTTCAGGGGATTGGGCTTGATACAGCTCTTCGTTTTGTTAGATGTTTTAGTGAAGAAGATGTATTGAATAGATTGCAAGAGATTGGCAATGGGAAAGTTTCAACAGTTCCCACCAGCATTGAACCTGCGGAAAATTGTGATGACATTGATGGGAACTTTGCAATCCGAAAACAACTTCATTGTTCCTTTTGTGGGCATCCAGGCAGCAAAAAAGATCATATGAAAACTTATTGTGAATTTTGTATTACAGATGATGATGAAGGTTGCTTGAGAAAACCAGAGGGTTTTACTTGTGGTTGCCCTTCCTGTGATATGATTAGGAAACGGAAGGGGCAGAGAAGAATGGAAAATTGGTACACAAAAATTTGTCTCAAGATTGCAGAGGAGCTCAATTTTCCCAGAGATGAAATCATTGAAATGTATTTATGCAATGACAATGTTTGCCATCCTGCAAGTGATGGTCCTTGCATTTCATGGGGTAGACCCAAGATTGAAATGCTGACAGATTTTTTAAAAGTCCATCAGCATTGGGATCCATCTTACGTTCGACAGCAGATTTTTCCTATGATGTCTACCATCTTTTTGAGAGACATGGCCAATACTCCTGTAGAAAGTCTGTTATTTGGGACATTTGGGTTTGATTCAATACAACGTGTGAAGATAAGATATAGATATCAATTTTATGTTGTGAAGTGGAAATGTGCAGTTGGCAACATTAGTTGTACAGTTCCATCACATGAATCTAGCTTGCAACAAGCAGATGGTAGTGAGCTTGATGAATTTGTGGATCTACTAGATGATTCTAGTGTTTCTGATATGGGTGATGGGTGTATCTTCCTGTTGACGGATGAAAATATGGATCTTGTGAGGGCTGCTTTTCCAGAAAAAGTTGAAAGGTTTTGGCAAGAGCAGGAATTGAAGGGATCGAAAAGAAGAAAGACTTATACCCCACGATCTCTAGAGAAAGAGAATTCATCATCATCAAACACAAGGAGTATTCAACAGAGCATTACAAAGTTCTACCGTTCTGCGAAAACGCAGAATCATTCAAAACAGGAAGTGGCATCTGATGATAACCTTGACAGTGGGAAAAGACCAATGTCCAGTCCAAATCTTACAAAATCAGCAAGGCGTCGCCTTTTATTTAAGTAG 1806 0.4092 MGVGGNFWDLLKPYARAEGFDFLRDKRVAVDLSFWIIQHQTAIRANARKPHLRLTFFRTINLFSKFGAYPVFVVDGTPSPLKSQARISRFFRFSGIELPTFPVAEESVPVERNREFSKSVQECVELVELLGMPVLYAKGEAEALCAQLNSEGHVDACITSDSDAFLFGAKCIIKSFCSNAKVAFECYNTEDIEDGLGLKRKHLIAISLLVGNDHDLTGVQGIGLDTALRFVRCFSEEDVLNRLQEIGNGKVSTVPTSIEPAENCDDIDGNFAIRKQLHCSFCGHPGSKKDHMKTYCEFCITDDDEGCLRKPEGFTCGCPSCDMIRKRKGQRRMENWYTKICLKIAEELNFPRDEIIEMYLCNDNVCHPASDGPCISWGRPKIEMLTDFLKVHQHWDPSYVRQQIFPMMSTIFLRDMANTPVESLLFGTFGFDSIQRVKIRYRYQFYVVKWKCAVGNISCTVPSHESSLQQADGSELDEFVDLLDDSSVSDMGDGCIFLLTDENMDLVRAAFPEKVERFWQEQELKGSKRRKTYTPRSLEKENSSSSNTRSIQQSITKFYRSAKTQNHSKQEVASDDNLDSGKRPMSSPNLTKSARRRLLFK 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0030 601 FunFam Flap endonuclease GEN-like 1 198 256 - -
Lele43g0030 601 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Lele43g0030 601 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 546 IPR006084 -
Lele43g0030 601 MobiDBLite consensus disorder prediction 529 601 - -
Lele43g0030 601 Pfam XPG N-terminal domain 1 86 IPR006085 GO:0004518
Lele43g0030 601 SMART xpgineu 128 198 IPR006086 GO:0004518
Lele43g0030 601 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Lele43g0030 601 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Lele43g0030 601 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Lele43g0030 601 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Lele43g0030 601 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Lele43g0030 601 SMART xpgn3 1 96 IPR006085 GO:0004518
Lele43g0030 601 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 415 IPR036279 -
Lele43g0030 601 CDD PIN_GEN1 2 202 - -
Lele43g0030 601 MobiDBLite consensus disorder prediction 538 568 - -
Lele43g0030 601 Gene3D - 198 263 - -
Lele43g0030 601 Gene3D - 5 197 - -
Lele43g0030 601 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Lele43g0030 601 FunFam Flap endonuclease GEN-like 1 2 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0030 Lele-ChrLele43 661279 667021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0030 1 245 Core DNA Replication Machinery Family AT5G26680 28.889 4.86e-16 79.0