Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0022 ATGTTGGGCTCAAACACCAATTTGGTAACCACGGTGATTGGATTTGGTATGAGTGCGACTTTTATTGTGTTTGTCTGTACAAGAATAATCTGTGGAAGGTTGCGAGGGTCCTCGGAATCTCATAATATGTATGAATTTGAACCTAGGATGGATATGGAACAGCCAGAACATCTTGTTAACCGCCCAGAATCTGTTCTTGTTACTGCAATTCCCACCATGAAGTTCAACCAAGAGGCTTTCAGTTCTATTGAAAATACACAGTGCGTCATATGTTTGGCTGAGTACAAAGAAAGAGAGGTACTACGCATCATGCCAAAATGTGGTCATAGCTTCCATCTTTCTTGCATCAATATATGGCTGAGGAAACAATCCACCTGCCCTGTATGCCGTCTTCCATTGCAGAATTCTTCTGAAACAAAGCATATGAGACCGGTAACGTTTAGCTTAGGGCAAGGTGAGTCTCAGACTTCTGAAAGTAGAGACAGTGAGAGGGATATTGAGCCCGTGCCAGGGAATCCCTTGCCCTTACCGCAACCAGATACTGCAGAAGCGGAAACAAGGCATTGA 567 0.4392 MLGSNTNLVTTVIGFGMSATFIVFVCTRIICGRLRGSSESHNMYEFEPRMDMEQPEHLVNRPESVLVTAIPTMKFNQEAFSSIENTQCVICLAEYKEREVLRIMPKCGHSFHLSCINIWLRKQSTCPVCRLPLQNSSETKHMRPVTFSLGQGESQTSESRDSERDIEPVPGNPLPLPQPDTAEAETRH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0022 188 PANTHER OS11G0150450 PROTEIN 1 160 - -
Lele43g0022 188 SUPERFAMILY RING/U-box 78 136 - -
Lele43g0022 188 CDD RING-H2_PA-TM-RING 87 130 - -
Lele43g0022 188 Pfam Ring finger domain 87 130 IPR001841 -
Lele43g0022 188 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Lele43g0022 188 MobiDBLite consensus disorder prediction 142 188 - -
Lele43g0022 188 MobiDBLite consensus disorder prediction 142 156 - -
Lele43g0022 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 140 IPR013083 -
Lele43g0022 188 SMART ring_2 88 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0022 Lele-ChrLele43 628303 629903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0022 8 133 C3H Transcription Factor Family AT1G72220 30.534 1.41e-18 80.5