LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele43g0021	ATGGCAGGAGCCGGAACTAAGAAATCTGCTTCTGCAACGCCGTCGCCTTCATCGTCAAATGCACAACCTAACAACAAGGCTACCATTATCAAACGGTTCATAGGGGTTCGCCAGAGGCCGTCGGGACGATGGGTCGCCGAGATCAAGGACTCGTCTCAGCATGTCCGGCTTTGGCTCGGAACCTATGACACCCCGGAGGAGGCTGCCCAAGCCTACGACGAGGCAGCCCGCGCCCTCCGTGGCGACAACGCCCGAACCAACTTTGTCTCCTTCGCCGCCAACGAGGGCCTATCGAAGCAGAGTGGACTGAGTTTTGCTTCTTTGAAAGCCAAGCTGAGCAGGAATCTTCAGAGCATAATGGCTAGGGCAAGCGATGGCAGCAGCGGTAATAAAGCATCCAATAGCAGGGTAACTGACCATTTTACCCTTGCCAGCATATTCCACAGAAGGACTAAATCTAACTACGGAGAGTACCAGTGCAACCAGATCCCTAATGCTAATGATATGGCGGAGAACGTGGTGCAGCCTAGTATTATAGTGCCGCCCATAGGGGATCAACCGGGTGCAGTTAGTTCCTGCTGGGAGAGCTCAAGCGTGTCAGATTGTAGCTCCGAGTGGGTCGGGTTCCGGCAACTTGGTTTGGACTCGGACGGATCAGATGCGGGCGGGGAGCAATTAGGGCTTAATCTGGAGCAGCTGTTGGGATGGGCGGATAGTCCGGATCATGGTAATAGTGTGTATGGGAGTAGGTTAATAAACGGAAGCGATGAACAAGATGAAGGATCAAGGAGCAAGAGGTTTAAGGTATCTTCTACGGTTCTTGTGCCTCCAACTTTCAGTGGGTCTCCAAATAACAACGATTTGGGGTCTCCTTACAGTGCTTATGGATCTCCATATAATAATATTGGAGGGAACCACGTGCTTATCGTGTTAATCAATACAGTCGGCAATACATTAATTTCTTCAGTTTCCTTCCTTCGTGTTTTCATTTTGGCAATTTCTACTATTGTGCCTAGGGTTTCATTCGTCGAGGCTTCAAAGCGGATTTTCTAA	1053	0.5033	MAGAGTKKSASATPSPSSSNAQPNNKATIIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAAQAYDEAARALRGDNARTNFVSFAANEGLSKQSGLSFASLKAKLSRNLQSIMARASDGSSGNKASNSRVTDHFTLASIFHRRTKSNYGEYQCNQIPNANDMAENVVQPSIIVPPIGDQPGAVSSCWESSSVSDCSSEWVGFRQLGLDSDGSDAGGEQLGLNLEQLLGWADSPDHGNSVYGSRLINGSDEQDEGSRSKRFKVSSTVLVPPTFSGSPNNNDLGSPYSAYGSPYNNIGGNHVLIVLINTVGNTLISSVSFLRVFILAISTIVPRVSFVEASKRIF	350

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele43g0021	350	SUPERFAMILY	DNA-binding domain	32	88	IPR016177	GO:0003677
	Lele43g0021	350	Pfam	AP2 domain	32	81	IPR001471	GO:0003700\|GO:0006355
	Lele43g0021	350	Gene3D	AP2/ERF domain	31	90	IPR036955	GO:0003700\|GO:0006355
	Lele43g0021	350	MobiDBLite	consensus disorder prediction	8	26	-	-
	Lele43g0021	350	SMART	rav1_2	32	95	IPR001471	GO:0003700\|GO:0006355
	Lele43g0021	350	CDD	AP2	31	88	IPR001471	GO:0003700\|GO:0006355
	Lele43g0021	350	FunFam	ethylene-responsive transcription factor RAP2-11	31	90	-	-
	Lele43g0021	350	ProSiteProfiles	AP2/ERF domain profile.	32	89	IPR001471	GO:0003700\|GO:0006355
	Lele43g0021	350	MobiDBLite	consensus disorder prediction	1	26	-	-
	Lele43g0021	350	PRINTS	Ethylene responsive element binding protein signature	55	71	IPR001471	GO:0003700\|GO:0006355
	Lele43g0021	350	PRINTS	Ethylene responsive element binding protein signature	33	44	IPR001471	GO:0003700\|GO:0006355
	Lele43g0021	350	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	9	147	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele43g0021	Lele-ChrLele43	617242	621176	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele43g0021	13	98	AP2-EREBP Transcription Factor Family	AT5G19790	56.322	7.54e-25	99.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele43g0021		AP2	7.7e-15	CL0081