Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0019 ATGTTTTCTTGGGCGCGTCTGATCCAGAGTGGTTGAAGTCAAATTAATTTCGAGTTCTGGCAGTTTGGGTTTCCTGATTCTTCGTCTCTAAGAACAACCATGGGGGTTGAAGATAATAATCATGACGATGGTCGTTCAACAGAAGATTGTTTGGTTCAAGCACAAGAGCTTGTCCCTCTTGCTCTTGAGAAGTCCAAGGAGGTGAAGAATTTCCCAGGAAGGTGGAAGATGATCATATCAAATCTCGAACAGATCCCTGGTCGTTTATCAGACTTATCTAGCCATCCGTGCTTCTCCAAGAACGCTCTCTGCAAGGAGCATTTGCACGCTGTATCATCAATACTCAGAAAAGCCATTCATTTGGCTGATCTTTGCGTGAAGGAGAAGTACGAAGGCAAGCTCAAGATGCAGAGTGATCTCGATGCCTTATCAGGACAACTCGATTTGCACCTGAAAGATTGCAGCCTGTTGATCAAAACTGGAGTTCTTGGGGAGGTCACCTTGCCATTAACAATATCATCAGAAGCTGATGTTTCGAGCAATATCAGGGAGTTACTGGCTCGCCTGCAGATCGGCCACTTGGAGGCGAAACACAGGGCTATAGAGAAACTACACGATGTGATGAAAGAAGATGACAAGAGTGTTTTAGGTGTTTTAACACGTAGCAACATAGCTGCTTTGATTCAATTGCTCATTGCTACTTCTTCAAGGATAAGAGAGAAAACTGTTGCCATTATATGCAGTCTTGCAGAATCAGGAAGCTGTGAGAATTGGTTAGTTGCTGAAGGTGTGATTCCACCTCTGATAAGGCTCATCGAATCGGGAAGTGCCATCGTGAAAGAGAAGGCCACCATAACCTTTCAGAGGCTCTCCATGTCATCAGAAACTGCTCGTGCCATTGTTGGACACGGTGGGGTTCGTCCACTCATTGATCTCTGTCAGACTGGCGATTCTGTGTCCCAAGCTGCTTGTGCTTGTACTTTGAAGAACATATCTGCTGTCCCCGAGGTTCGACAAGTTCTAGCCGAGGAAGGGATTGTTAAGGTAATGATCAGTCTCCTAAACTGTGGCATGTTGTTGAATTCCAAGGACTATGCAGCTGAGTGCCTGCAGAATCTCACCTCAAGCAATGAGAATCTAAGAAGGCTTGTCATATCAGAAAATGGAATAAGAAGCCTTATAGCTTATTTAGACGTTCCTCTTCCACAAGAATCTTCGATGGGAGCCCTGAGGAACGTAGTAGGATCGGTCTCTGAGCAATCTCTAGTTTCCATGGGTCTACTCCCTCGCCTGGCTCATGTCCTAAAATCTGGGTCTATCGGGGCCCAGCAAGCGGCTGCTTCTACAATATGTAAAATTTGCAGCTCAGGAGAGATGAAGAAGATGATTGGTGAGGCTGGGTGTGTGCCTCTGCTGGTGAAAATGCTGGAGGCTAAGTCTAATGGTGCTAGAGAGGTGGCTGCACAGGCGATTTCGAGCTTGATGATGCAGTCTCAGAATCGAAGAGAGGTGAAGAAGAACGACAAGAGCGTGCCTAATCTTGTTCAGTTGCTTGATCCGAATCCTCAAAATACTGCGAAGAAATATGCAGCGGCATGCCTTGGATCGCTTTCTTCGAGTCAAAAGTGTAGGAAACTGATGATCTCCTACGGAGCGATCGGCTATCTGAAGAAGCTGAGTGAGATGGAGATTCCGGGAGCGAAGAAGCTACTTGAGAGATTGGAAAGAGGGAAATTGAGGAGGTTGTTTAGCAGGAAATAG 1761 0.4605 MFSWARLIQSGXSQINFEFWQFGFPDSSSLRTTMGVEDNNHDDGRSTEDCLVQAQELVPLALEKSKEVKNFPGRWKMIISNLEQIPGRLSDLSSHPCFSKNALCKEHLHAVSSILRKAIHLADLCVKEKYEGKLKMQSDLDALSGQLDLHLKDCSLLIKTGVLGEVTLPLTISSEADVSSNIRELLARLQIGHLEAKHRAIEKLHDVMKEDDKSVLGVLTRSNIAALIQLLIATSSRIREKTVAIICSLAESGSCENWLVAEGVIPPLIRLIESGSAIVKEKATITFQRLSMSSETARAIVGHGGVRPLIDLCQTGDSVSQAACACTLKNISAVPEVRQVLAEEGIVKVMISLLNCGMLLNSKDYAAECLQNLTSSNENLRRLVISENGIRSLIAYLDVPLPQESSMGALRNVVGSVSEQSLVSMGLLPRLAHVLKSGSIGAQQAAASTICKICSSGEMKKMIGEAGCVPLLVKMLEAKSNGAREVAAQAISSLMMQSQNRREVKKNDKSVPNLVQLLDPNPQNTAKKYAAACLGSLSSSQKCRKLMISYGAIGYLKKLSEMEIPGAKKLLERLERGKLRRLFSRK 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0019 586 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 263 305 IPR000225 GO:0005515
Lele43g0019 586 Pfam Armadillo/beta-catenin-like repeat 458 494 IPR000225 GO:0005515
Lele43g0019 586 Pfam Armadillo/beta-catenin-like repeat 294 333 IPR000225 GO:0005515
Lele43g0019 586 SUPERFAMILY ARM repeat 181 545 IPR016024 -
Lele43g0019 586 SMART arm_5 334 375 IPR000225 GO:0005515
Lele43g0019 586 SMART arm_5 293 333 IPR000225 GO:0005515
Lele43g0019 586 SMART arm_5 376 415 IPR000225 GO:0005515
Lele43g0019 586 SMART arm_5 497 539 IPR000225 GO:0005515
Lele43g0019 586 SMART arm_5 211 251 IPR000225 GO:0005515
Lele43g0019 586 SMART arm_5 456 496 IPR000225 GO:0005515
Lele43g0019 586 SMART arm_5 252 292 IPR000225 GO:0005515
Lele43g0019 586 SMART arm_5 416 455 IPR000225 GO:0005515
Lele43g0019 586 Gene3D - 172 418 IPR011989 -
Lele43g0019 586 Gene3D - 419 565 IPR011989 -
Lele43g0019 586 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 37 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0019 Lele-ChrLele43 603877 606842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0019 268 569 U-box Gene Family AT2G23140 21.122 2.36e-06 48.5