Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1332 ATGAGATGCACTGGTTGCCAGGGTGAAGCTAATGAGGTTGCATTGTTGGATGGAATGATTTATCTACTCTTTGGCTTATTCAGTTTCCTTCGTTCGGGTTTGCATTCTGCAATATCTCCTCTCGCGCCTAGGGTTTCATTAGTCCAGGCTTCTAAGAGGCCTGTCTTTTGTGGAAACCTGGATTTCGATGCGCGCCAGTCTGATGTTGAGAGACTCTTCAGAAGATATGGGAAAGTTGACAGAGTGGACTTGAAGTCTGGGTTTGCTTTTGTTTACATGGAAGATGAACGTGATGCTGAGTATGCAATTAGAAGACTTGATAGAACAGAGTTTGGTAGAAAGGGGCGCCGAATACGTGTTGAGTGGACTAAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAGAAGATCTTCAACTAATATGAGACCATCAAAGACATTGTTTGTCATAAATTTTGATCCTGTTCACACCAGGACAAGGGATCTAGAGAGGCACTTTGATCCCTATGGGAAAATACTGAATATAAGGATAAGAAGGAATTTTGCTTTTGTTCAGTATGAATCCCTGGAGGATGCCACTAGAGCATTGGAGGCAACTAACATGAGCAAGTTATTGGATCGGGTTATAGCAGTGGAGTATGCAATAAGAGATGATGATGATGATGATAGAAGAAATGGATACAGTCCTGATAGAAGAGGCCGAGACATATCCCCTGATGGGAGATATGGTCGTGGTAGATCACTTAGCCCTTACCGTAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCGAATCCAACTTCCAGACCGGAGCCAAGAGGAAGCCCCAAGTATGAACGGAATGAAAGCCCATTAAATGGAAGATATGACAGCCGATCACCGCCACCGTGCCATGGGTCCCGTTCCCCAGGAGAAGTTGAATAG 927 0.4498 MRCTGCQGEANEVALLDGMIYLLFGLFSFLRSGLHSAISPLAPRVSLVQASKRPVFCGNLDFDARQSDVERLFRRYGKVDRVDLKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRRSSTNMRPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFVQYESLEDATRALEATNMSKLLDRVIAVEYAIRDDDDDDRRNGYSPDRRGRDISPDGRYGRGRSLSPYRRGRGSPDYGHGSNPTSRPEPRGSPKYERNESPLNGRYDSRSPPPCHGSRSPGEVE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1332 308 FunFam Serine/arginine-rich splicing factor RS31 138 230 - -
Lele42g1332 308 MobiDBLite consensus disorder prediction 220 308 - -
Lele42g1332 308 SUPERFAMILY RNA-binding domain, RBD 53 221 IPR035979 GO:0003676
Lele42g1332 308 FunFam Serine/arginine-rich splicing factor RS31 52 136 - -
Lele42g1332 308 Gene3D - 48 140 IPR012677 -
Lele42g1332 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 125 IPR000504 GO:0003723
Lele42g1332 308 SMART rrm1_1 147 213 IPR000504 GO:0003723
Lele42g1332 308 SMART rrm1_1 54 121 IPR000504 GO:0003723
Lele42g1332 308 MobiDBLite consensus disorder prediction 220 242 - -
Lele42g1332 308 CDD RRM1_AtRSp31_like 53 124 - -
Lele42g1332 308 CDD RRM2_AtRSp31_like 147 216 - -
Lele42g1332 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 210 IPR000504 GO:0003723
Lele42g1332 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 114 IPR000504 GO:0003723
Lele42g1332 308 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 147 291 - -
Lele42g1332 308 Gene3D - 141 228 IPR012677 -
Lele42g1332 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 217 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1332 Lele-ChrLele42 25143244 25147604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1332 46 226 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 2.03e-09 56.6