Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1331 ATGGCAGGAGCTGGGACTAAGAAATCTGCTTCTGCAACTACGTCGCCTTCATCATCAGACGCACAACCCAACAACAAGACCACGATGATCAAACGATTCATAGGGGTTCGCCAGAGGCCGTCCGGACGATGGGTCGCAGAGATAAAGGACTCGTCTCAGCATGTCCGACTTTGGCTAGGAACCTATGACACCCCAGAGGAGGCGGCCCAAGCCTACGACGAGGCAGCCCGAGCCCTCCGTGGCGACAACGCCCGAACCAACTTCGTCTCCTCCTCCGCCACCGCCACCAACGAAGGCCTATCGAAGCAGAGTGGACTGAGTTTTGCTTCTCTGAAAGCCAAGCTGAGCAGGAATCTTCAGAGCATAATGGCTAGGGCAAGCGACGGCAGCGGCAGTAATAAAGCATCCAAGAGCAGGGTAACTGACCATTTTACCCTAGCGAGCATATTCCATAGAAGGACTGGTTCTAACTACGGACAGTACCAACTCAACCAGATCCCTAGTGATACGGCGGAAAACGTGGTGCAGCCTAGTATAATAGTGCCGCCTGTTGGGGATCAAACGGCGTGTGCAGTTAGTTCCTGGGAGAGCTCGAGCGTATCAGATTGTAGCTCCGAGTGGGTGGGGTTCCGGCAACCTGGTTTGGACTCGGACGGATCAGATGCCGGCGGGGAGCAGTTAGGGCTTAATCTGGAGCAGCTGTTGGGGTGGGTGGATAGTCCGGATCATGGGTACGGAAGTAGATTAATAAATGGAAGCGATGGACAAGATGAAGGGTCAAGGAGCAAGAGGTTTAAGGTATCTTCTTCAGTTCTGGTGCCTCCAACTTTCAGTGGGTCTCCGAATAACAATGATTTTGGGTCTCCTTATAGTGCTTATGGATCTCCGTACAATAATATTGGCGGCAAGTGA 912 0.5285 MAGAGTKKSASATTSPSSSDAQPNNKTTMIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAAQAYDEAARALRGDNARTNFVSSSATATNEGLSKQSGLSFASLKAKLSRNLQSIMARASDGSGSNKASKSRVTDHFTLASIFHRRTGSNYGQYQLNQIPSDTAENVVQPSIIVPPVGDQTACAVSSWESSSVSDCSSEWVGFRQPGLDSDGSDAGGEQLGLNLEQLLGWVDSPDHGYGSRLINGSDGQDEGSRSKRFKVSSSVLVPPTFSGSPNNNDFGSPYSAYGSPYNNIGGK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1331 303 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Lele42g1331 303 MobiDBLite consensus disorder prediction 1 28 - -
Lele42g1331 303 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Lele42g1331 303 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Lele42g1331 303 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Lele42g1331 303 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Lele42g1331 303 FunFam ethylene-responsive transcription factor RAP2-11 31 90 - -
Lele42g1331 303 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Lele42g1331 303 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Lele42g1331 303 MobiDBLite consensus disorder prediction 247 303 - -
Lele42g1331 303 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Lele42g1331 303 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 153 - -
Lele42g1331 303 MobiDBLite consensus disorder prediction 7 28 - -
Lele42g1331 303 MobiDBLite consensus disorder prediction 265 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1331 Lele-ChrLele42 25140537 25141448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1331 32 88 AP2-EREBP Transcription Factor Family AT5G19790 71.930 7.33e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele42g1331 AP2 6.2e-15 CL0081