Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1330 ATGTTGGGCTCAAACACCAATTTGGTGACCACGGTGATTGGATTTGGTATGAGTGCGACTTTTATTGTGTTTGTATGTACAAGAATAATCTGTGGAAGGTTGCGAGGGTCCTCGGAATCTCATAATATGTATGAATATGAACCTAGGATGGATATAGAACAGCCAGAACATCTTATTAACCGCCTAGAACCTGTTCTTGTTACTGCAATTCCTACCATGAAGTTCAACCAAGAGGCTTTCAGTTCTATTGAAAATACACAGTGTGTGATATGTTTGGCAGAGTACAAAGAAAGAGAGGTACTGCGCATCATGCCAAATTGTGGTCATAGCTTCCATCTTTCTTGCATTGATATATGGCTGAGGAAACAATCCACCTGCCCTGTATGCCGTCTTCCATTGCAGAATTCTTCTGAAGCAAAGCATATGAGACCAGTAACGTTTAGCTTAGGGCAAGGTGAGTCTCAGACTTCTGAAAGTAGAGACAGTGAGAGGAATACGGACCCCGTGCCGGGGAATCCCTTGCCCTTACAGCAATCAGATACTGCAGAAGCAGAAACAAGGCAATGA 567 0.4321 MLGSNTNLVTTVIGFGMSATFIVFVCTRIICGRLRGSSESHNMYEYEPRMDIEQPEHLINRLEPVLVTAIPTMKFNQEAFSSIENTQCVICLAEYKEREVLRIMPNCGHSFHLSCIDIWLRKQSTCPVCRLPLQNSSEAKHMRPVTFSLGQGESQTSESRDSERNTDPVPGNPLPLQQSDTAEAETRQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1330 188 CDD RING-H2_PA-TM-RING 87 130 - -
Lele42g1330 188 SMART ring_2 88 129 IPR001841 -
Lele42g1330 188 MobiDBLite consensus disorder prediction 142 188 - -
Lele42g1330 188 MobiDBLite consensus disorder prediction 171 188 - -
Lele42g1330 188 SUPERFAMILY RING/U-box 78 135 - -
Lele42g1330 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 140 IPR013083 -
Lele42g1330 188 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Lele42g1330 188 FunFam Putative RING zinc finger domain superfamily protein 64 136 - -
Lele42g1330 188 PANTHER OS11G0150450 PROTEIN 1 167 - -
Lele42g1330 188 Pfam Ring finger domain 87 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1330 Lele-ChrLele42 25129522 25131133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1330 8 133 C3H Transcription Factor Family AT1G72220 32.061 3.60e-19 82.0