Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1326 ATGCTTCAGGAAAAACTCCTCACTATTGTAACTGCTACACTAGGCTCCAGCGCATTATCCATTGTTGAGCAGAGGAAGGATGAGCTTCACCTTGTGCTCATGGAGGTTCACTTGCCTGACATGGGAATATATGAACTCTTAAGAAAAATGAGGGAAGCCTGCAAATTGCCATTTTTCCTTATGTCAGCTGATGCTAATCAAATTTCAATTGTGGGAGCATCCGCTGAAGGGGCTGGACATTATTTCATAAAGCCAGTTATGATTGCTGATTTAAGGGGACAATGGCAGTTCAGTGCAAGGAGGGACAACTTGGAAACAGGGAATTGGAGCCTCCATAGTGCAAAAAGGAAAGAGCCAGAACCGCTTGATAAAACTAAAGATAAAGAACCCATTGATCTGAAAAGGCAAAAGTTTACCTGGACTTTAGATTTACATAAGAAGTTTATGGAATCCATGAGATTATTAGGACCCTCTGCTAGTCCAGGGAAAATACTGGAGCATATGAACGTGCTAGGGCCTGAAAAAGATGGGTTTTCAAGTTATTTGCAGCATTGTCCTGGTCCTTCAAATTTTCGTTCCCGAGAAATTTGGACTTGCCAAGAGTTAAATTATGGGCAAAATCCATTGATCCCTCCTTCCAATCTGGCGCCAAGTGAATTCATGATCACAGATACTAATGGGAAGGAAAATGCTACTGGTGGAGGAATTTTCAAAAGTGATGACCCATTTCTGTCCTATTTTGAGTATACTGAAGAAGGAAATGAAATGCTTTACTCAGCAATGCTAGCTAGTTACGTGGACCAATTTGTCCCATTTCCTCCGCCACCATTCATGGTCGAAGAATATGGGATGTTAGAGGACATCATCGATGGCCTTATAGATTTTCCAAAAGGAGCTGACCAGTTTAGCGATGACGAGGAGTTTAATCTCTGGAGGTTGAAAAGAGTCGGCGCCATGCTTGTTGCTGCGGGATTGATTAATGGTGACCTTCACCTATACCGTTATAACCCTGATAGCGCGCCTGTAAGGGCTGCAGTCAATAGATTGATAAATTTGACTGAGTCAACTGTTGCTACAGGAGATGATGAAGGGTGTATTAAGGTATGGGATACTAGACAACGTTCTTGTTGCAATTCATTTGATGCTCATGAAGATTACATTTCAGACATTACTTTTGCATCTGATGCAATGAAACTGTTGGGAACAAGGTACTGTATTCTTAGTCAATCTTTCTCTTTTCTTGGTTATGCATTGAGGCAGAACGGTAGGAAAATTGTATGTGGATCACAAACTGGAACCCTATTACTGTATTCATGGGGATATTTCCAGGATTGCAGTTATCGGTTTATTGATCTCTCACCAAACTCTATTGATGCTTTGTTGAAGCTTGATGAGGACCGGATCATCACTGGATCAGAGAATGGGCTAATCAAAGTCATCCAATCAATTGCAGAGCACTCAGAATATCCTATTGAACGTCTTGCTTTTTCTCATGATAGAAAGTACCTTGGCAGTATTTCACACGATCATATGTTAAAGCTATGGGACTTGGATGATCTACTACAAGGTGGTTCAAGAAGCACACAAAGGAATGAAGCTGAGGTGATCGATAGCGACAGGGATGGGATGGATGTAGATGCCAATCCTTCTAAGAGTGATAAAGGGACCAAGAGAAAGAATCCAATTAATGGCCATGCTATGGGTGGCTCCAACAATTTTTTTGGGGATTTGAAGATTGCTGGAACAAAACTGTTGTTTAATTCTGTTGATCCTACTAGAAAACTGTCAATATCAGCTTGTACAAGTCAAGCTTCTTCTGCTGATGAAAGAAGTGGGAAAACTACGAGACCGAGCTCAGCCAACTACCACGCCACCCTCAGAGCTCTCAACTACAAAGGTCGATTCCCCAGAAAATCCCTCTGCCAGCATTATATGTTGAACTCTGATATCAACGAGCAGCTGGCTCGAGCGGCTGGTGTTGAAGAAGGCGATGTGGTGTTGGAAATTGGGCCAGGAACGGGTTCTTTGACTTATATTCTTTTAAACGCTGGTGCATTTGTTCTTGCAGTCGAAAAGGATAAACACATGGCTGATCTCGTGAGTGAAAGGTTTCTAGGCACAGAAAAGTTGAAGGTGTTGACTGAGGATATTGTTAAATGCCATGTCTGCTCTCATATATTGTCGTTGTTTGACAGCATAAGGCGAATGGATCCAGAAACTAGACATGCAAAATGTGACACTCAGTTTAGGCGTTCCATCTTTAATCTGTTATGGATATTCTTGCATTTGGTTTCCAACCTTCCCTTTAATGTAAGTACAGATGTGATCAAGCTGCTTCTTCCTATGGGTGATATTATCTCAGAAGTGGCTCTATTACTCCAGGAGGAGACAGCTTTGCGCTTGGTAGAATCGTCTCTGAGGACCTCTGAGTATCGCCCCATCAATATTTTTGTTAACTTCTACTCAGACCCAGAATACAAATTGAAAGTCCCCAGGACAAATTTTTCCCTCAGCCTAACTGGTTCATTTGAATCTATTACAGTGACCGTCAACTCAGCATTCAACGGGAAACGCAAAATGCTGCGGAAGTCGCTTCAGCACATATGCACGTCAATAGAGATCGAAGAAGCTTTGAAAAAGATAGATCTTCCAACTACTTCAAGACCTGAAGAACTCACATTGGATGATTTCGTTAAGTTGCATAACTTGATTGTGAAAGGATTGCAATCTAGATTTCCTTTTGAATTTCTTACAGGAACCTTGCACAAGGCAAGAGTTTCAGATACAAGTAAGGCCCCTTTTCATACAGAAGGACATGCAGATTTGAAAGTTGAAACCAAGCAGGGAACTGAAAGATGA 2859 0.4169 MLQEKLLTIVTATLGSSALSIVEQRKDELHLVLMEVHLPDMGIYELLRKMREACKLPFFLMSADANQISIVGASAEGAGHYFIKPVMIADLRGQWQFSARRDNLETGNWSLHSAKRKEPEPLDKTKDKEPIDLKRQKFTWTLDLHKKFMESMRLLGPSASPGKILEHMNVLGPEKDGFSSYLQHCPGPSNFRSREIWTCQELNYGQNPLIPPSNLAPSEFMITDTNGKENATGGGIFKSDDPFLSYFEYTEEGNEMLYSAMLASYVDQFVPFPPPPFMVEEYGMLEDIIDGLIDFPKGADQFSDDEEFNLWRLKRVGAMLVAAGLINGDLHLYRYNPDSAPVRAAVNRLINLTESTVATGDDEGCIKVWDTRQRSCCNSFDAHEDYISDITFASDAMKLLGTRYCILSQSFSFLGYALRQNGRKIVCGSQTGTLLLYSWGYFQDCSYRFIDLSPNSIDALLKLDEDRIITGSENGLIKVIQSIAEHSEYPIERLAFSHDRKYLGSISHDHMLKLWDLDDLLQGGSRSTQRNEAEVIDSDRDGMDVDANPSKSDKGTKRKNPINGHAMGGSNNFFGDLKIAGTKLLFNSVDPTRKLSISACTSQASSADERSGKTTRPSSANYHATLRALNYKGRFPRKSLCQHYMLNSDINEQLARAAGVEEGDVVLEIGPGTGSLTYILLNAGAFVLAVEKDKHMADLVSERFLGTEKLKVLTEDIVKCHVCSHILSLFDSIRRMDPETRHAKCDTQFRRSIFNLLWIFLHLVSNLPFNVSTDVIKLLLPMGDIISEVALLLQEETALRLVESSLRTSEYRPINIFVNFYSDPEYKLKVPRTNFSLSLTGSFESITVTVNSAFNGKRKMLRKSLQHICTSIEIEEALKKIDLPTTSRPEELTLDDFVKLHNLIVKGLQSRFPFEFLTGTLHKARVSDTSKAPFHTEGHADLKVETKQGTER 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1326 952 FunFam Ribosomal RNA small subunit methyltransferase A 840 906 - -
Lele42g1326 952 SUPERFAMILY WD40 repeat-like 320 522 IPR036322 GO:0005515
Lele42g1326 952 Gene3D - 133 187 - -
Lele42g1326 952 MobiDBLite consensus disorder prediction 526 567 - -
Lele42g1326 952 Gene3D - 841 904 IPR023165 -
Lele42g1326 952 Gene3D - 303 561 IPR015943 GO:0005515
Lele42g1326 952 PANTHER DIMETHYLADENOSINE TRANSFERASE 613 904 IPR001737 -
Lele42g1326 952 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 642 906 IPR029063 -
Lele42g1326 952 MobiDBLite consensus disorder prediction 928 952 - -
Lele42g1326 952 Pfam Ribosomal RNA adenine dimethylase 637 836 IPR001737 -
Lele42g1326 952 ProSitePatterns Trp-Asp (WD) repeats signature. 503 517 IPR019775 -
Lele42g1326 952 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 636 908 IPR001737 -
Lele42g1326 952 SUPERFAMILY CheY-like 6 117 IPR011006 -
Lele42g1326 952 Gene3D Vaccinia Virus protein VP39 628 838 IPR029063 -
Lele42g1326 952 SMART WD40_4 476 516 IPR001680 GO:0005515
Lele42g1326 952 SMART WD40_4 328 370 IPR001680 GO:0005515
Lele42g1326 952 SMART WD40_4 373 438 IPR001680 GO:0005515
Lele42g1326 952 Gene3D - 1 114 - -
Lele42g1326 952 MobiDBLite consensus disorder prediction 532 560 - -
Lele42g1326 952 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 666 693 IPR020596 GO:0000154|GO:0000179|GO:0008649
Lele42g1326 952 SMART rADcneu6 650 841 IPR020598 GO:0000154|GO:0000179|GO:0008649
Lele42g1326 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 484 518 IPR001680 GO:0005515
Lele42g1326 952 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
Lele42g1326 952 MobiDBLite consensus disorder prediction 600 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1326 Lele-ChrLele42 25100113 25113866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1326 1 172 Response Regulator Gene Family AT4G16110 31.429 4.74e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele42g1326 RrnaAD 3.4e-23 CL0063