Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1313 ATGGTACGAGGGAAGACTCAGATGAGGCGTATAGAGAACGCCACGAGCAGGCAAGTGACTTTCTCAAAGCGCCGTAATGGGCTACTCAAGAAGGCCTTTGAACTCTCAGTACTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCCAGAGGCAAGCTTTATGAATATGCTAGCTCCAGCAGCTTGCACGAGACAATTGAACGCTACCGCAAGCATAGCAGGGATACTCAAGCAGCCACCAGATCCAGTGAACAAAATATGCAGCATTTGAAGCAAGAAGCAGCAAGCATGATGAAGAAAATCGAGCTTCTTGAACTTTCAAAACGGAAACTCTTGGGGGAAGGTTTAGGGTCATGCTCCATGCAAGAGTTAAACCAGATAGAACAACAGTTGGAGAAGAGTGTGAGCACCATTCGAGCAATGAAGAATCAGGTTTTCAACGAACAAATCGAGCAACTAAAAGCAAAGGAAGAAGTCCTTGAAGCTGAAAATGCAAGGCTCTCTGAGAAGTGCGGTATAAAGCTACAGCAAGCAAAAAATGGTGAGCAGCAGAGAGAAAGCCAACCCTATGCAGAAAGCTGTCCAAGTTCAGAGGTGGAAACTGAGTTATTCATTGGATTACCAGAAACCAGAGCAAGACGAAGCATTCTGCCTCCTCTACCTCCAAGGTCTAGTTGA 681 0.4567 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEYASSSSLHETIERYRKHSRDTQAATRSSEQNMQHLKQEAASMMKKIELLELSKRKLLGEGLGSCSMQELNQIEQQLEKSVSTIRAMKNQVFNEQIEQLKAKEEVLEAENARLSEKCGIKLQQAKNGEQQRESQPYAESCPSSEVETELFIGLPETRARRSILPPLPPRSS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1313 226 Coils Coil 125 171 - -
Lele42g1313 226 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Lele42g1313 226 FunFam MADS-box protein SOC1 14 96 - -
Lele42g1313 226 MobiDBLite consensus disorder prediction 179 199 - -
Lele42g1313 226 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele42g1313 226 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Lele42g1313 226 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele42g1313 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele42g1313 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele42g1313 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele42g1313 226 Coils Coil 88 108 - -
Lele42g1313 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele42g1313 226 Gene3D - 14 103 IPR036879 GO:0003677|GO:0046983
Lele42g1313 226 MobiDBLite consensus disorder prediction 179 196 - -
Lele42g1313 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Lele42g1313 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele42g1313 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele42g1313 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1313 Lele-ChrLele42 24993537 25003544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1313 1 157 MADS-box Gene Family AT2G45660 76.433 1.79e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele42g1313 K-box 4e-26 No_clan