Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1308 ATGCCCCCCTCTTTCTTTTCGAGCTTTCCCTATTCAGACTGTGAACATGCTATTCATTCTACTGTTTGTTTCAACTTCCATCTCTTTATTCAAACAGAATCTGGCTATCTGCCCCCCCAAAAAGTAAAAAAGGCGCATCGCAGCAATTTTCAGATCCCAAGTCATTCACAGGAGTATAGAGAGAAGGAGAAGGAGAAGGAGATGGAGGGGGAGATGGAGGGGGAGAGAGAAAGTGACGAGATTGCAAGAGTCAACCACCGACCCTTTTTGGATCATTATATTTGCAGGTCTCGAGTGGAACCGGTTCATATTTTGGCTCGAAAATTTCCGGGTTTAAAGCTAATCGTGGAACAAGGCATAGCAATTGCAGCTTACTTGTGTAGAAGGAGAATCGAAGAAGCTTTTTCTTTGATGAGTTTTGTGGGTTTTCCAGATATTCCTTCTTATAGCAGCAACGATTCTTCTAGAATGCCCTCTGGTGCAATCTCACAGCCTCGCCTTCTCACTTCCACTCCCACAGCTAAAGCCATGTTCAACTCTCCTGGCCTCTCACTTACCCTTCAAACCGATATAGATGGGCAAAGGGATGGAAATAGAATGTCTGAGAATTACGAGATGAATGTTAATGGGAGACGAAGCAGAGAAGAAGAGCAAGAAAGCAGATCTGGAAGTGATAACTTGGAAGTTGCTTCCGGCGACGATCAAGACGCCTCCGATCACCCTCCCAGGAAAAAGCGTTATCACCGACACACCCCTCAACAGATACAAGAGCTTGAAGCTTTGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAGAGATTGGAACTGAGCAAGAGGCTTTGTTTGGAAACGAGGCAAGTGAAATTTTGGTTCCAGAATAGAAGAACTCAGATGAAGACCCAATTGGAACGCCATGAGAATACACTGCTTAGGCAAGAGAATGACAAGCTTAGAGCTGAGAACATGTCCATGAGGGACGCCATGAGGAACTCCATTTGCTCAAACTGTGGGGGACCAGCTATAATGGGAGAAATTTCACTGGAGGAACAGCATCTTCGGGTCGAAAATGCCCGGTTAAAGGACGAGTTGGACCGGGTTTGTGCCCTCGCCGGCAAGTTCCTCGGCCGCCCAGTTTCTTCATATCCCAACTCAATGGCTCCCACATTGGCAAACTCAAGTTTGGAGCTAGGGGTTGGAAGCGATGGCTTTGGTGGTATAAGCACTGTGCCTGCAACGTTGCCCATGGGGCCTGACTTGGGTGTGGGCATCTCTAGCCCATTAGCCATGGGAACTCCTCATCCTGCTCCTTCCAGACCGGCCGGGCTCGATAGATCACTAGGGAGGTCCATGTTTCTAGAGCTTGCTTTGGTAGCCGTGGATGAATTGGTGAAGATGGCTCAGAGTGATGAGCCTCTATGGATGAGGAGTTTGGAAGGTGGAAGAGAAATCCTCAACCATGAGGAGTACTCAAGGACTTTCACACCTTGCATTGGCTTAAAACCTAATGGCTTTGTGTCCGAAGCCTCAAAGGAGACTGGAATGGTCATCATAAATAGCTTGGCCCTTGTAGAAACTCTGATGGACTCGAATCGATGGGCAGAGATGTTCCCTTGTATGATTGCAAGAACTTCCACCACTGAAGTTATATCTGGTGGAATAAATGGGACCAGAAATGGTGCTCTTCAACTAATGCATGCTGAGCTGCAAGTTCTATCGCCGTTGGTGCCTGTTCGGGAGGTCAATTTCCTCCGGTTCTGCAAGCAGCATGCGGAGGGAGTGTGGGCTATTGTGGATGTGTCCATTGATACTGTCCGGGAAACTTCTGGTGCGCCACCTTTTGTGAACTGTAGGAGGCTTCCTTCAGGCTGTCTAGTTCAAGACATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAGCATGCAGAATACGATGAAAGGCAAGTTCACGAGCTGTATAGAGGCTTGTTAAGTTCAGGCTTGGCTTTTGGCGCGCAACGCTGGATTGCCACCCTTCAGCGACAATGCGAATGCCTCGCCATTTTAATGTCTTCATCACTTCCTTCAAGAGATCAATCTGGCCATGAATTCGAGCCAGAGCAGCATGCTAATATTGCAGGAGACATGCATCGACGCTGCGGGGGCGCTCGTTGTGTACGCGCCGGTGGACATTCCGGCGATGCACCTGGTCATGAACGGTGGCGATTCGGCTTACGTGGCGTTACTCCCGTCGGGGTTCGTGATCGTGCCAGACGGGTCTGGGTGGCGTGGGTCGCAAACGCCGGTCGGCAGAGCGAGTGGGTCACTCCTAACGGTGGCGTTTCAGATACTGGTGAACAGCCTGCCGACGGCGAAGCTGACGGTAGAGTCAGTGGAGACGGTGAACAACCTCATCTCTTGTACGGTGCAGAAGATAAAGGCCGCGCTTCCGGGGGTGAAATAGGGAATAGGGGGAAGGGTGTTGAGTCAAGAACGAACCGAGCCGGAAAGAGTGAGGGTCCTTTGCTGAGTTTATTGTCAAAACTGAGAAGGAAAATGTTGATGAGCGGGAGATGTTGGGGTGTGGTTGAGGTTCAGGCTGGGCTACTTCAAATGGGTTTGCTGCTTGCAGAGGCATCATCCATAACTCTCCAGGCTCTTGGTGGAAGGGATTCACAAAATTGGAGTTATCACCATCAAAGACGGGAACAAGTTGACGGTACTCCTCAAGATTTGATTGCTGCTGATCCATTCATAGGCTTACTTATGGGAATACATAGTCTTTGCAGTACAAGCCCTGACACCTTTCCTGCCTAA 2793 0.4937 MPPSFFSSFPYSDCEHAIHSTVCFNFHLFIQTESGYLPPQKVKKAHRSNFQIPSHSQEYREKEKEKEMEGEMEGERESDEIARVNHRPFLDHYICRSRVEPVHILARKFPGLKLIVEQGIAIAAYLCRRRIEEAFSLMSFVGFPDIPSYSSNDSSRMPSGAISQPRLLTSTPTAKAMFNSPGLSLTLQTDIDGQRDGNRMSENYEMNVNGRRSREEEQESRSGSDNLEVASGDDQDASDHPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSMRDAMRNSICSNCGGPAIMGEISLEEQHLRVENARLKDELDRVCALAGKFLGRPVSSYPNSMAPTLANSSLELGVGSDGFGGISTVPATLPMGPDLGVGISSPLAMGTPHPAPSRPAGLDRSLGRSMFLELALVAVDELVKMAQSDEPLWMRSLEGGREILNHEEYSRTFTPCIGLKPNGFVSEASKETGMVIINSLALVETLMDSNRWAEMFPCMIARTSTTEVISGGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAIVDVSIDTVRETSGAPPFVNCRRLPSGCLVQDMPNGYSKVTWVEHAEYDERQVHELYRGLLSSGLAFGAQRWIATLQRQCECLAILMSSSLPSRDQSGHEFEPEQHANIAGDMHRRCGGARCVRAGGHSGDAPGHERWRFGLRGVTPVGVRDRARRVWVAWVANAGRQSEWVTPNGGVSDTGEQPADGEADGRVSGDGEQPHLLYGAEDKGRASGGEIGNRGKGVESRTNRAGKSEGPLLSLLSKLRRKMLMSGRCWGVVEVQAGLLQMGLLLAEASSITLQALGGRDSQNWSYHHQRREQVDGTPQDLIAADPFIGLLMGIHSLCSTSPDTFPA 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1308 930 SMART START_1 453 677 IPR002913 GO:0008289
Lele42g1308 930 ProSiteProfiles 'Homeobox' domain profile. 241 301 IPR001356 GO:0003677
Lele42g1308 930 CDD homeodomain 243 301 IPR001356 GO:0003677
Lele42g1308 930 MobiDBLite consensus disorder prediction 765 829 - -
Lele42g1308 930 Pfam START domain 454 677 IPR002913 GO:0008289
Lele42g1308 930 FunFam Homeobox-leucine zipper protein GLABRA 2 453 676 - -
Lele42g1308 930 Gene3D - 230 317 - -
Lele42g1308 930 MobiDBLite consensus disorder prediction 56 79 - -
Lele42g1308 930 ProSiteProfiles START domain profile. 444 680 IPR002913 GO:0008289
Lele42g1308 930 SUPERFAMILY Homeodomain-like 230 301 IPR009057 -
Lele42g1308 930 SUPERFAMILY Bet v1-like 446 677 - -
Lele42g1308 930 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 240 700 IPR042160 -
Lele42g1308 930 CDD START_ArGLABRA2_like 448 676 - -
Lele42g1308 930 Pfam Homeodomain 244 299 IPR001356 GO:0003677
Lele42g1308 930 ProSitePatterns 'Homeobox' domain signature. 276 299 IPR017970 GO:0000981|GO:0006355
Lele42g1308 930 MobiDBLite consensus disorder prediction 186 251 - -
Lele42g1308 930 SMART HOX_1 242 305 IPR001356 GO:0003677
Lele42g1308 930 MobiDBLite consensus disorder prediction 208 223 - -
Lele42g1308 930 MobiDBLite consensus disorder prediction 186 207 - -
Lele42g1308 930 Gene3D - 514 674 IPR023393 -
Lele42g1308 930 MobiDBLite consensus disorder prediction 55 79 - -
Lele42g1308 930 Coils Coil 295 327 - -
Lele42g1308 930 FunFam Homeobox-leucine zipper protein HDG1 231 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1308 Lele-ChrLele42 24948582 24956833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1308 168 692 Homeobox Transcription Factor Family AT4G00730 65.607 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele42g1308 START 4.5e-56 CL0209