Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1297 ATGAAGAAACAGGTTTTGATGCTGTGGTGGTTTGGAATCATGACTATGCAACTCTGCTTCTCGCTGGCTGCTTCTTCTGATGGCAACATATCAGACAGTGCTGCGGTTAAGCTAAATGCACAAGATCCAAACCAACTGGTCATTGACAATGGCATCGTTCAACTCACTCTATCTACCCCTCAAGGCTATGTTATTGGAATCTCATACCATGGAATCGACAATCTCCTAGAATCTCGTCACGCGCTAAACGACAGAGGGTATTTTGACGTAGTTTGGAATGAACCAGGAAAGAATAGTATTGCTCAAAGAATCATTGGGACCCATTTCTCAATCGTAGCATCGGACGAGAGCCAAGTGGAGGTTTCGTTTGTGAGAACATGGACTTCCTCAATGCAAGGCACTGATGTGCCCATTAACATTGACCAAAGGTATGTATTGCGACGAGGCAGCTCTGGATTTTACTCTTATGTGATATTCGAGCGTCCACAAGGATTTCCAGCCGTCGAGGTTGATCAACTTAGGATTGTTTACAAACTCCAAGAACAAAGGTTTCATTATATGGCTGTAGCAGACAACAGGCAAAGATTCATGCCAACCATGGAAGATAGAGAGAGCGGGAAAGTCCTGGATTATCCCGAGGCTGTTCTCTTAACCCAGCCTTCCGACAAAGATTTCAAAGGAGAGGTGGACGACAAATATGAGTACTCTTGTGAGAACTCAGACAACAGAGTCCATGGTTGGATTAGCTTTGATTCTAGTGCAGCCGGCTTCTGGATGATAACACCTAGCAACGAGTTTCGCAATGCTGGACCCACTAAGCAAGACCTCACCTCTCACGTGGGCCCCTTTACCCTTTCGATGTTTGTGAGCACCCACTATGCTGGGAAGGAGGTAACCATGGCATTTCAAGAAGGGGAGACCTATAAGAAGGTTTTTGGCCCTGTTTTTGTGTATCTCAACTCTCTTTCAAGCAATGATGATCCACACTCGCTTTGGCCAGATGCAGTGCGACAGATGTACAAGGAAGCCAAAAGCTGGCCTTATGATCTCCCACATTCAAGAGACTTCATTCCATCTACTCAACGTGGAAGTGTGGTTGGAAGATTACTCGTACAAGATCGGTGTATCCGAGGAGGGAGACTTCTATATGCTGAATCTGCTTATGTTGGTCTAGCTCTTCCGGGTGCTGAAGGATCATGGCAAAGAGAAAGCAAGGGCTATCAGTTTTGGACACAAGCAGATAACAAGGGCTATTTCATGATTAAGAATGTTATACCAGGGCACTATAATTTGTTTGCGTGGGTTCCTGGCTTTATTGGTGATTACAAATATAATAATATAATCACTATCACGCCAGGGTGTTTAATCAAATTGGATTCACTTGTATTTAGTCCTCCAAGAAATGGTTCTACTCTTTGGGAAATTGGAGTTCCAGATCGCACAGCCGCAGAGTTCTATATCCCAGACCCTAACCCTAAACTCATCAACAAATTATACAATAAACAACTCAAAGACAAGTTTAGGCAATATGGACTGTGGGAACGTTATGCTGACTTGTATCCACATAATGATCTAGTTTACACTGTTGGTGTTGATAGCTATGATCGAGACTGGTTTTACGCTCATGTTACAAGGAGAATCGGAAATGGAGTATATCAACCAACGACATGGCAAATTCTATTTGAACTTGAAGACAATGCATTCACTGGAAGTTATACACTACGATTAGCCCTGGCATCAGCCACTCATTCTCAATTGCAAGTTTGGGTGAATGGGGAAGGTGATAATGGGGCAATATTTGAAAGAGAAGATATGGGAGGAGATAATGCAATAGCAAGGCATGGAATCCATGGATTATATTGGTTGTTCAGTATCGATGTTCCAAGCGATCGTTTTGTGAAAGGGAAAAATATTATATATTTAAGACAATCCAATGCCACTAATGCTTTCCAGGGAGTTATGTATGACTATATTCGTTTAGAAAGGCCTTCAACTCTAAAGGCTTGA 2007 0.4285 MKKQVLMLWWFGIMTMQLCFSLAASSDGNISDSAAVKLNAQDPNQLVIDNGIVQLTLSTPQGYVIGISYHGIDNLLESRHALNDRGYFDVVWNEPGKNSIAQRIIGTHFSIVASDESQVEVSFVRTWTSSMQGTDVPINIDQRYVLRRGSSGFYSYVIFERPQGFPAVEVDQLRIVYKLQEQRFHYMAVADNRQRFMPTMEDRESGKVLDYPEAVLLTQPSDKDFKGEVDDKYEYSCENSDNRVHGWISFDSSAAGFWMITPSNEFRNAGPTKQDLTSHVGPFTLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYLNSLSSNDDPHSLWPDAVRQMYKEAKSWPYDLPHSRDFIPSTQRGSVVGRLLVQDRCIRGGRLLYAESAYVGLALPGAEGSWQRESKGYQFWTQADNKGYFMIKNVIPGHYNLFAWVPGFIGDYKYNNIITITPGCLIKLDSLVFSPPRNGSTLWEIGVPDRTAAEFYIPDPNPKLINKLYNKQLKDKFRQYGLWERYADLYPHNDLVYTVGVDSYDRDWFYAHVTRRIGNGVYQPTTWQILFELEDNAFTGSYTLRLALASATHSQLQVWVNGEGDNGAIFEREDMGGDNAIARHGIHGLYWLFSIDVPSDRFVKGKNIIYLRQSNATNAFQGVMYDYIRLERPSTLKA 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1297 668 CDD RGL4_C 473 661 - -
Lele42g1297 668 Gene3D - 38 330 IPR014718 GO:0030246
Lele42g1297 668 CDD RGL4_M 361 461 IPR029413 -
Lele42g1297 668 Pfam Polysaccharide lyase family 4, domain III 471 660 IPR029411 -
Lele42g1297 668 CDD RGL4_N 44 331 - -
Lele42g1297 668 SUPERFAMILY Starch-binding domain-like 357 459 IPR013784 GO:0030246
Lele42g1297 668 SUPERFAMILY Galactose-binding domain-like 468 661 IPR008979 -
Lele42g1297 668 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 38 664 - -
Lele42g1297 668 Gene3D - 357 454 - -
Lele42g1297 668 Pfam Polysaccharide lyase family 4, domain II 386 457 IPR029413 -
Lele42g1297 668 Pfam Rhamnogalacturonate lyase family 30 229 IPR010325 -
Lele42g1297 668 Gene3D - 468 661 - -
Lele42g1297 668 SUPERFAMILY Galactose mutarotase-like 42 323 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele42g1297 668 FunFam Rhamnogalacturonate lyase B 358 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1297 Lele-ChrLele42 24886718 24891345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1297 36 664 Polysaccharide Lyase AT1G09890 55.924 0.0 730