Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele42g1283 | ATGGAAACCAAGGATGGCGACGAAATCCATAACTGTTTGATCAATCTGAGAAATTGTCCCAAGAGGCGAAGGGACAAGGTTTACATTGGCTGTGGAGCAGGGTTTGGTGGTGACAGGCCTTTGGCTGCTCTTAAGTTGCTCACAAGAGTCAAAGAACTAAACTACCTGGTACTTGAATGCCTGGCTGAGCGTACTCTTGCTGATCGCTATCAGATCATGATTTCTGGTGGTGATGGTTATGATTCCCAGATTACTGACTGGATGCGTACATTGCTGCCTCAAGCTACAGAAAGAGGAACTTGCATAATTACCAATATGGGTGCAATGGATCCTCTGGGTGCTCAAGCAAAAGTTTTAGAAATAGCTAGCAGCTTGGGGCTTAATGTTTCTGTTTCTGTTGCTCATGAGATATCCACCTCCAATTTAGGTTTAGGATGCTTACCTGAGAGATTGAATAACATGGAGGGTGGTGTCAGCACCTACCTGGGAGCGGCTCCTATTGTTCACTGTCTTGAAAAGTACCAACCAAATGTGATAATCACTTCAAGAATTGCTGATGCTGCTTTATTCTTGGCACCTATGGTTTATGAACTAGGTTGGAATTGGGATGACTTAAATCAGCTAGCACAAGGATCTCTGGCTGGGCACCTTCTAGAGTGTGGCTGCCAACTCACTGGGGGATATTTCATGCATCCAGGAGACAAGTATCGAGATATGCCCTTTGAGCAACTACTGGATTTATCACTTCCGTATGCTGAGATTTGTTTTGATGGACAAGTGTGTGTAGCAAAGGCGGAAGGTAGTGGTGGAGTTCTAAATTTCAGTACATGTGCTGAACAACTTCTTTATGAGGTTGGAGATCCTGGTGCTTATGTAACCCCTGATTTGGTTGTTGATTTTCAGAATGTTTCTTTCCTTCCATATTCAAGCTGTAGAGTTCTCTGTATGGGGGCAAAACCCTCTACTAAACCAGTTCCTGATGAACTTCTTCAGCTGGTTCCAAAGGAGTGCGGATGGAAGGGATGGGGAGAGATATCTTATGGCGGCTATGAATGTGTAAAACGCGCTAAAGCTGCTGAATTTTTGGTTAGATCATGGATGGGAGAATCGTTTCCCAATCTTAACTCCCAAATTGTTTCTTATATAATTGGATTTGATAGCCTCAAGGCTACCAGCAATGATGGAAATTCTTCATCCTGGGAGGCTAGTGAAGACATAAGGTTACGGATGGACGGACTCTTTATGCAGAAGGAACATGCTGTCCAATTTACTAGAGAATTTACGGCGTTGTATACAAATGGGCCTGCTGGTGGTGGCGGTATCAGTTCTGGATTGAAGAAAGAAATTCTTCTTGAAAAGAGATTGGCTAGGCGCGAGGATGCTTTTTGGCGAATTGGTGTGAAGAGCTGCAGGACAAGCACTTCAGATAAAGTAGCCGTTCCTGAATGCAATCTGAATCACACATTTGCACGGCCACCACATGTAAAAGCTGAAACTGACAATTCTTCCTCAGAATTTGCTTCACCTGCCCCTTCTGGACAGAAGATTCCTCTCTACCGCGTGGCGCACAGCCGAGCTGGTGATAAAGGAAATGACTTAAACTTTTCTCTCATACCACATTTCCTACCTGATGTTGAGAGGTTGAAGATGATTATCACACCTCAATGGGTAAAAGAAGTGGTCTCTCCCCTTTTGAAGTTGTCTGCTTTGGATTCAGATGCCGGAAATGAAAGATACAAATGTTTGAATGATAATGTTAAGGTGGAGATATATGAAGTTAAGGGAATCCAGTCATTGAATGTTGTTGTCAGAAACATCCTAGACGGCGGCGTCAACTGCTCTCGAAGAATCGATCGCCATGGAAAGACCATTTCAGATCTCATTCTCTGCCAACAAGTAGTATTGCCCCCATTATTGTGAAGAGAAATGGCGTTCACAGGAACATTGGATAAATGCAATGCATGTGATAAGACTGTTTATGTGGTGGATCTGTTGTCGCTTGAGGGAGTTCCTTACCATAAATCTTGCTTTAGATGCAGTCACTGCAAGGGGTCCCTTTCGATGAGTAGCTACTCTTCAATGGATGGTGTTCTGTATTGCAAGCCTCATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAGACAGCAAAGTCTTCTGAAAAATCACATGACACGAGCAAGAACTCAAACAAACTCTCTTCATTGTTCAGTGGAACACAAGACAAATGTGCAGTTTGCACTAAAACAGTCTATCCTCTGGAGAAGGTGACCCTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTGACAAACTCCTCCTATGCTGCTCTTGATGGTGTCCTGTATTGCAGGCACCACTTTGCTCAGCTTTTCATGGAGAAAGGTTCTTACAACCATGTCAAGCAAGTCACTGCTCACAAAAAGAACTCTGCTTCTGGTCAGCTTGATGACCACCCTATAGATGGCTCTCACCCAGATGATGAACATCCATCTCAGGACCATGATGGCACTAAACATGAAGTAGATGAAGATGAACAATCTTGA | 2583 | 0.4375 | METKDGDEIHNCLINLRNCPKRRRDKVYIGCGAGFGGDRPLAALKLLTRVKELNYLVLECLAERTLADRYQIMISGGDGYDSQITDWMRTLLPQATERGTCIITNMGAMDPLGAQAKVLEIASSLGLNVSVSVAHEISTSNLGLGCLPERLNNMEGGVSTYLGAAPIVHCLEKYQPNVIITSRIADAALFLAPMVYELGWNWDDLNQLAQGSLAGHLLECGCQLTGGYFMHPGDKYRDMPFEQLLDLSLPYAEICFDGQVCVAKAEGSGGVLNFSTCAEQLLYEVGDPGAYVTPDLVVDFQNVSFLPYSSCRVLCMGAKPSTKPVPDELLQLVPKECGWKGWGEISYGGYECVKRAKAAEFLVRSWMGESFPNLNSQIVSYIIGFDSLKATSNDGNSSSWEASEDIRLRMDGLFMQKEHAVQFTREFTALYTNGPAGGGGISSGLKKEILLEKRLARREDAFWRIGVKSCRTSTSDKVAVPECNLNHTFARPPHVKAETDNSSSEFASPAPSGQKIPLYRVAHSRAGDKGNDLNFSLIPHFLPDVERLKMIITPQWVKEVVSPLLKLSALDSDAGNERYKCLNDNVKVEIYEVKGIQSLNVVVRNILDGGVNCSRRIDRHGKTISDLILCQQVVLPPLLXREMAFTGTLDKCNACDKTVYVVDLLSLEGVPYHKSCFRCSHCKGSLSMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSEKSHDTSKNSNKLSSLFSGTQDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTNSSYAALDGVLYCRHHFAQLFMEKGSYNHVKQVTAHKKNSASGQLDDHPIDGSHPDDEHPSQDHDGTKHEVDEDEQS | 860 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele42g1283 | 860 | Pfam | LIM domain | 748 | 803 | IPR001781 | - | |
| Lele42g1283 | 860 | Pfam | LIM domain | 652 | 707 | IPR001781 | - | |
| Lele42g1283 | 860 | ProSiteProfiles | LIM domain profile. | 650 | 710 | IPR001781 | - | |
| Lele42g1283 | 860 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 740 | 773 | - | - | |
| Lele42g1283 | 860 | SMART | lim_4 | 651 | 703 | IPR001781 | - | |
| Lele42g1283 | 860 | SMART | lim_4 | 747 | 799 | IPR001781 | - | |
| Lele42g1283 | 860 | Gene3D | Cysteine Rich Protein | 742 | 812 | - | - | |
| Lele42g1283 | 860 | MobiDBLite | consensus disorder prediction | 824 | 860 | - | - | |
| Lele42g1283 | 860 | ProSiteProfiles | LIM domain profile. | 746 | 806 | IPR001781 | - | |
| Lele42g1283 | 860 | ProSitePatterns | LIM zinc-binding domain signature. | 652 | 686 | IPR001781 | - | |
| Lele42g1283 | 860 | CDD | LIM2_SF3 | 748 | 808 | - | - | |
| Lele42g1283 | 860 | Pfam | Acyclic terpene utilisation family protein AtuA | 29 | 373 | IPR010839 | - | |
| Lele42g1283 | 860 | FunFam | LIM domain and actin-binding 1 | 646 | 716 | - | - | |
| Lele42g1283 | 860 | PANTHER | PROPIONYL-COA CARBOXYLASE | 1 | 637 | - | - | |
| Lele42g1283 | 860 | MobiDBLite | consensus disorder prediction | 816 | 860 | - | - | |
| Lele42g1283 | 860 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 774 | 813 | - | - | |
| Lele42g1283 | 860 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 644 | 677 | - | - | |
| Lele42g1283 | 860 | FunFam | LIM domain and actin-binding 1 | 742 | 812 | - | - | |
| Lele42g1283 | 860 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 678 | 718 | - | - | |
| Lele42g1283 | 860 | Gene3D | Cysteine Rich Protein | 647 | 714 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele42g1283 | Lele-ChrLele42 | 24807840 | 24814650 | Dispersed/Wgd |
Transcription factors information