Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1283 ATGGAAACCAAGGATGGCGACGAAATCCATAACTGTTTGATCAATCTGAGAAATTGTCCCAAGAGGCGAAGGGACAAGGTTTACATTGGCTGTGGAGCAGGGTTTGGTGGTGACAGGCCTTTGGCTGCTCTTAAGTTGCTCACAAGAGTCAAAGAACTAAACTACCTGGTACTTGAATGCCTGGCTGAGCGTACTCTTGCTGATCGCTATCAGATCATGATTTCTGGTGGTGATGGTTATGATTCCCAGATTACTGACTGGATGCGTACATTGCTGCCTCAAGCTACAGAAAGAGGAACTTGCATAATTACCAATATGGGTGCAATGGATCCTCTGGGTGCTCAAGCAAAAGTTTTAGAAATAGCTAGCAGCTTGGGGCTTAATGTTTCTGTTTCTGTTGCTCATGAGATATCCACCTCCAATTTAGGTTTAGGATGCTTACCTGAGAGATTGAATAACATGGAGGGTGGTGTCAGCACCTACCTGGGAGCGGCTCCTATTGTTCACTGTCTTGAAAAGTACCAACCAAATGTGATAATCACTTCAAGAATTGCTGATGCTGCTTTATTCTTGGCACCTATGGTTTATGAACTAGGTTGGAATTGGGATGACTTAAATCAGCTAGCACAAGGATCTCTGGCTGGGCACCTTCTAGAGTGTGGCTGCCAACTCACTGGGGGATATTTCATGCATCCAGGAGACAAGTATCGAGATATGCCCTTTGAGCAACTACTGGATTTATCACTTCCGTATGCTGAGATTTGTTTTGATGGACAAGTGTGTGTAGCAAAGGCGGAAGGTAGTGGTGGAGTTCTAAATTTCAGTACATGTGCTGAACAACTTCTTTATGAGGTTGGAGATCCTGGTGCTTATGTAACCCCTGATTTGGTTGTTGATTTTCAGAATGTTTCTTTCCTTCCATATTCAAGCTGTAGAGTTCTCTGTATGGGGGCAAAACCCTCTACTAAACCAGTTCCTGATGAACTTCTTCAGCTGGTTCCAAAGGAGTGCGGATGGAAGGGATGGGGAGAGATATCTTATGGCGGCTATGAATGTGTAAAACGCGCTAAAGCTGCTGAATTTTTGGTTAGATCATGGATGGGAGAATCGTTTCCCAATCTTAACTCCCAAATTGTTTCTTATATAATTGGATTTGATAGCCTCAAGGCTACCAGCAATGATGGAAATTCTTCATCCTGGGAGGCTAGTGAAGACATAAGGTTACGGATGGACGGACTCTTTATGCAGAAGGAACATGCTGTCCAATTTACTAGAGAATTTACGGCGTTGTATACAAATGGGCCTGCTGGTGGTGGCGGTATCAGTTCTGGATTGAAGAAAGAAATTCTTCTTGAAAAGAGATTGGCTAGGCGCGAGGATGCTTTTTGGCGAATTGGTGTGAAGAGCTGCAGGACAAGCACTTCAGATAAAGTAGCCGTTCCTGAATGCAATCTGAATCACACATTTGCACGGCCACCACATGTAAAAGCTGAAACTGACAATTCTTCCTCAGAATTTGCTTCACCTGCCCCTTCTGGACAGAAGATTCCTCTCTACCGCGTGGCGCACAGCCGAGCTGGTGATAAAGGAAATGACTTAAACTTTTCTCTCATACCACATTTCCTACCTGATGTTGAGAGGTTGAAGATGATTATCACACCTCAATGGGTAAAAGAAGTGGTCTCTCCCCTTTTGAAGTTGTCTGCTTTGGATTCAGATGCCGGAAATGAAAGATACAAATGTTTGAATGATAATGTTAAGGTGGAGATATATGAAGTTAAGGGAATCCAGTCATTGAATGTTGTTGTCAGAAACATCCTAGACGGCGGCGTCAACTGCTCTCGAAGAATCGATCGCCATGGAAAGACCATTTCAGATCTCATTCTCTGCCAACAAGTAGTATTGCCCCCATTATTGTGAAGAGAAATGGCGTTCACAGGAACATTGGATAAATGCAATGCATGTGATAAGACTGTTTATGTGGTGGATCTGTTGTCGCTTGAGGGAGTTCCTTACCATAAATCTTGCTTTAGATGCAGTCACTGCAAGGGGTCCCTTTCGATGAGTAGCTACTCTTCAATGGATGGTGTTCTGTATTGCAAGCCTCATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAGACAGCAAAGTCTTCTGAAAAATCACATGACACGAGCAAGAACTCAAACAAACTCTCTTCATTGTTCAGTGGAACACAAGACAAATGTGCAGTTTGCACTAAAACAGTCTATCCTCTGGAGAAGGTGACCCTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTGACAAACTCCTCCTATGCTGCTCTTGATGGTGTCCTGTATTGCAGGCACCACTTTGCTCAGCTTTTCATGGAGAAAGGTTCTTACAACCATGTCAAGCAAGTCACTGCTCACAAAAAGAACTCTGCTTCTGGTCAGCTTGATGACCACCCTATAGATGGCTCTCACCCAGATGATGAACATCCATCTCAGGACCATGATGGCACTAAACATGAAGTAGATGAAGATGAACAATCTTGA 2583 0.4375 METKDGDEIHNCLINLRNCPKRRRDKVYIGCGAGFGGDRPLAALKLLTRVKELNYLVLECLAERTLADRYQIMISGGDGYDSQITDWMRTLLPQATERGTCIITNMGAMDPLGAQAKVLEIASSLGLNVSVSVAHEISTSNLGLGCLPERLNNMEGGVSTYLGAAPIVHCLEKYQPNVIITSRIADAALFLAPMVYELGWNWDDLNQLAQGSLAGHLLECGCQLTGGYFMHPGDKYRDMPFEQLLDLSLPYAEICFDGQVCVAKAEGSGGVLNFSTCAEQLLYEVGDPGAYVTPDLVVDFQNVSFLPYSSCRVLCMGAKPSTKPVPDELLQLVPKECGWKGWGEISYGGYECVKRAKAAEFLVRSWMGESFPNLNSQIVSYIIGFDSLKATSNDGNSSSWEASEDIRLRMDGLFMQKEHAVQFTREFTALYTNGPAGGGGISSGLKKEILLEKRLARREDAFWRIGVKSCRTSTSDKVAVPECNLNHTFARPPHVKAETDNSSSEFASPAPSGQKIPLYRVAHSRAGDKGNDLNFSLIPHFLPDVERLKMIITPQWVKEVVSPLLKLSALDSDAGNERYKCLNDNVKVEIYEVKGIQSLNVVVRNILDGGVNCSRRIDRHGKTISDLILCQQVVLPPLLXREMAFTGTLDKCNACDKTVYVVDLLSLEGVPYHKSCFRCSHCKGSLSMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSEKSHDTSKNSNKLSSLFSGTQDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTNSSYAALDGVLYCRHHFAQLFMEKGSYNHVKQVTAHKKNSASGQLDDHPIDGSHPDDEHPSQDHDGTKHEVDEDEQS 860
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1283 860 Pfam LIM domain 748 803 IPR001781 -
Lele42g1283 860 Pfam LIM domain 652 707 IPR001781 -
Lele42g1283 860 ProSiteProfiles LIM domain profile. 650 710 IPR001781 -
Lele42g1283 860 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 740 773 - -
Lele42g1283 860 SMART lim_4 651 703 IPR001781 -
Lele42g1283 860 SMART lim_4 747 799 IPR001781 -
Lele42g1283 860 Gene3D Cysteine Rich Protein 742 812 - -
Lele42g1283 860 MobiDBLite consensus disorder prediction 824 860 - -
Lele42g1283 860 ProSiteProfiles LIM domain profile. 746 806 IPR001781 -
Lele42g1283 860 ProSitePatterns LIM zinc-binding domain signature. 652 686 IPR001781 -
Lele42g1283 860 CDD LIM2_SF3 748 808 - -
Lele42g1283 860 Pfam Acyclic terpene utilisation family protein AtuA 29 373 IPR010839 -
Lele42g1283 860 FunFam LIM domain and actin-binding 1 646 716 - -
Lele42g1283 860 PANTHER PROPIONYL-COA CARBOXYLASE 1 637 - -
Lele42g1283 860 MobiDBLite consensus disorder prediction 816 860 - -
Lele42g1283 860 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 774 813 - -
Lele42g1283 860 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 644 677 - -
Lele42g1283 860 FunFam LIM domain and actin-binding 1 742 812 - -
Lele42g1283 860 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 678 718 - -
Lele42g1283 860 Gene3D Cysteine Rich Protein 647 714 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele42g1283 Lele-ChrLele42 24807840 24814650 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele42g1283 AtuA 6.8e-91 No_clan