Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele42g1280 | ATGAACGATAGAGCTAGATATCCACCTGGGATTGGCGTAGGTCGAGGGGGAGGTATGAACTCGAACCCTGCGTTTCAACCGCGACCTCATCAGCAACAGTATGTGCAAAGGCATTTAGTGCAGAATCAACAGCAGTATCAACATCAGTATCAACATCATCAACAGCAACATCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAATGGCTTAGAAGAACGCAATTGACTGGTGCTGATTCTAACGTAGTTGATGAGGTCGAGAAGACTGTGCAGTCTGAAGCCGTTGATTCAAGTTCTCAAGATTGGAAAGCAAGATTAAAGATACCACCACCTGATACGCGTTATAGGACTGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAAGCCTTCTCCTATCCAGGAAGAAAGTATCCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGAGCAAAAAATGGAACGGGAAAAACAGCTGCATTCTGCGTTCCTGCACTAGAGAAAATTGATCAGGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACACGTGAATTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTAGGAAAGCATCTGAAAATTCAAGTCATGGTTACGACGGGTGGTACCAGCCTGAAAGATGATATCATGCGTTTATATCAACCTGTTCATTTACTTGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTCTGCATTTTGAAAGACTGTAGTATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCACCAGAATTCCAACCTTCGATAGAGCAATTGGTTCATTTCCTGCCACCAAACCGTCAAATCCTGATGTTTTCAGCTACTTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATTTCTTCGAAAACCATATATCATTAACCTTATGGATGAGTTAACTCTGAAAGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGTCTCAATACACTTTTCTCTAAGCTGCAAATAAACCAGTCAATTATCTTCTGCAATTCGGTGAATCGGGTTGAGCTCCTTGCTAAGAAAATCACAGAACTTGGCTATTCATGCTTCTATATCCATGCAAAGATGTTGCAAGATCATCGTAACAGAGTATTTCATGACTTCCGCAATGGTGCTTGTAGAAATCTTGTTTGTACTGATCTTTTTACCAGGGGAATAGACATCCAAGCAGTTAATGTGGTCATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTCTAGCAGTTAACCTGATCACCTATGAGGATCGTTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACATATTGATCAGGCAATTTACTGCCGGTGA | 1506 | 0.4057 | MNDRARYPPGIGVGRGGGMNSNPAFQPRPHQQQYVQRHLVQNQQQYQHQYQHHQQQHQQQQQQQQQQQQWLRRTQLTGADSNVVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLVHFLPPNRQILMFSATFPVTVKDFKDRFLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR | 501 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele42g1280 | 501 | Pfam | DEAD/DEAH box helicase | 152 | 316 | IPR011545 | GO:0003676|GO:0005524 | |
Lele42g1280 | 501 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Lele42g1280 | 501 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 158 | 328 | IPR014001 | - | |
Lele42g1280 | 501 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 274 | 282 | IPR000629 | - | |
Lele42g1280 | 501 | MobiDBLite | consensus disorder prediction | 89 | 111 | - | - | |
Lele42g1280 | 501 | SMART | helicmild6 | 378 | 459 | IPR001650 | - | |
Lele42g1280 | 501 | Coils | Coil | 43 | 63 | - | - | |
Lele42g1280 | 501 | MobiDBLite | consensus disorder prediction | 24 | 62 | - | - | |
Lele42g1280 | 501 | FunFam | ATP-dependent RNA helicase DDX6 | 108 | 331 | - | - | |
Lele42g1280 | 501 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 127 | 155 | IPR014014 | GO:0003724 | |
Lele42g1280 | 501 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 62 | 500 | - | - | |
Lele42g1280 | 501 | SMART | ultradead3 | 146 | 342 | IPR014001 | - | |
Lele42g1280 | 501 | Gene3D | - | 332 | 501 | IPR027417 | - | |
Lele42g1280 | 501 | CDD | SF2_C_DEAD | 339 | 468 | - | - | |
Lele42g1280 | 501 | Gene3D | - | 85 | 331 | IPR027417 | - | |
Lele42g1280 | 501 | CDD | DEADc_DDX6 | 129 | 329 | - | - | |
Lele42g1280 | 501 | Pfam | Helicase conserved C-terminal domain | 353 | 459 | IPR001650 | - | |
Lele42g1280 | 501 | FunFam | ATP-dependent RNA helicase DDX6 | 332 | 501 | - | - | |
Lele42g1280 | 501 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 338 | 498 | IPR001650 | - | |
Lele42g1280 | 501 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 197 | 481 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele42g1280 | Lele-ChrLele42 | 24790353 | 24794823 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele42g1280 | 127 | 498 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 39.037 | 1.13e-96 | 296 |