Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1273 ATGGATCGGGGGGACCAAATGGCGTTATCTGGGTCTGCATCTTACTATATGCAGAGGGGAATAGCTGGTTCTGCCGGACAGCCTGAGCTTCATGGTTCCCCAACTATTCACCAACTTTCTAATTCCAATCTATCATTTCAACCCAGCATTGGGGGTGGTTCTATTGGATCCACGCTACCATTAGAATCTTCAGCCATTTCATCTCATGGTGTTAATGTAGGCGCTCCGTCTGGAGTGCAATCTGGGGAACCTCTTAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGTCCAGATGGAACTGTGTCATTGGCATTGACTCCAATGTCGTCTAGTCATCCTGGAAGTGGTCATTCTGGGAGTAGAACTGAGACACAGAGCCATAAGAGGGGTAGAGGGCGCCCACCTGGGTCTGGCAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGAATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGATATTGTGTCAAAAATAATGGCATTCTCCCAGCAAGGGTCTAGAGCCGTGTGTGTATTGTCGGCCAATGGTGCTGTTTCAAATGCGACCCTCTGTCAGCCTTCAACTTTGGGTGGTTCTGTCACATATGAGGGGCGTTATGAGATATTGTGCCTGTCAGGCTCTTACTTGCTTAATGAAAGTGGAGGCTCCCGCAATCGAACTGGTGGATTGAGTGTCTCTCTTGCTAGTCCTGAGGGTAAAATAATTGGTGGAGGAGTTGGTGGAATGCTTATTGCAGCATGTCCTGTTCAGGTGATAGTAGGGAGCTTTTTATGGGGTGGATCGAAGACCAAGAACAAGAAAAAAGAAGTTGAAGAAGTTCCCGTGGAGTCGGATCATCAGAATCGTCAGGATCATCAGGCAGTTCATAATCCAGTAGCTATGAATGACATTATGGCCAATCAGAATCTCACCCAACCATCTTCTATGGGTACATGGCCGGTATCTCGTACGATGGATATTCGCAATTCCCATGTTGACATCGATTTAATGCGCGGGTGA 1050 0.4724 MDRGDQMALSGSASYYMQRGIAGSAGQPELHGSPTIHQLSNSNLSFQPSIGGGSIGSTLPLESSAISSHGVNVGAPSGVQSGEPLKRKRGRPRKYGPDGTVSLALTPMSSSHPGSGHSGSRTETQSHKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIVSKIMAFSQQGSRAVCVLSANGAVSNATLCQPSTLGGSVTYEGRYEILCLSGSYLLNESGGSRNRTGGLSVSLASPEGKIIGGGVGGMLIAACPVQVIVGSFLWGGSKTKNKKKEVEEVPVESDHQNRQDHQAVHNPVAMNDIMANQNLTQPSSMGTWPVSRTMDIRNSHVDIDLMRG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1273 349 MobiDBLite consensus disorder prediction 24 44 - -
Lele42g1273 349 CDD DUF296 159 273 IPR005175 -
Lele42g1273 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 68 325 IPR039605 GO:0003680
Lele42g1273 349 MobiDBLite consensus disorder prediction 70 143 - -
Lele42g1273 349 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Lele42g1273 349 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lele42g1273 349 FunFam AT-hook motif nuclear-localized protein 1-like 160 290 - -
Lele42g1273 349 ProSiteProfiles PPC domain profile profile. 154 298 IPR005175 -
Lele42g1273 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 275 - -
Lele42g1273 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 273 IPR005175 -
Lele42g1273 349 Gene3D - 160 300 - -
Lele42g1273 349 MobiDBLite consensus disorder prediction 103 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1273 Lele-ChrLele42 24760029 24767391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1273 1 349 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.185 1.33e-89 271