Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1270 ATGGGGATTCAGTGCTCCAAACTCATGCCATGTTGTGCAAATTCTCAAGTAAAGGCTTCCGTTCTTGAAGCTCCAGATACTGAAAAGGAGGATAGAAGTGAGGCCAGTAACTGGCCTGCGTTCCGTGAATTTTCATTGGAGCAACTAAAGAATGCAACATCTGGTTTTGCTGTTGAGAATATTGTATCTGAACATGGAGAGAAGGCACCAAATGTTGTTTACAAAGGGAAGCTGGAGAATCAAATTAGGATTGCTGTTAAACGCTTTAACAGAAATGCTTGGCCTGATGGCCGGCAGTTTTTGGAGGAAGCAAGATCTGTTGGTGAGCTCCGCAACCAGCGATTAGCAAATTTGATTGGTTGTTGTTGTGAGGGTGATGAGAGGTTGCTTGTGGCAGAATTTATGCCGAATGAAACGCTGGCAAAACACCTTTTCCATTGGGAAACTCAACCTATGAAATGGGCAATGCGATTAAGAGTTGTTTTCCATCTTGCCCAAGCTCTAGAATATTGCACAGAAAGAGGACGAGTCCTCTATCATGACCTTAATGCATACAGAGTTTTATTTGATGAGGAGGGCAATCCTAGGCTTTCAACTTTTGGCCTTATGAAGAATAGTAGGGATGGGAAAAGTTATAGCACAAATTTGGCTTTTACCCCTCCGGAATATCTGAGAACTGGGAGAGTAACACCAGAAAGTGTAATATATAGTTTCGGCACTCTTTTGCTTGACCTTCTCAGCGGGAAGCACATCCCCCCAAGCCATGCCCTTGATTTAATTCGGGACAGAAATCTTCAAATGCTGACAGATTCTTGTTTGGAAGGACAATTTTCTGATGATGATGGAACGGAGTTGGTACGCTTGGCATCTCGATGCTTACAGTATGAACCTAGAGAAAGGCCAAATCCTAGATCATTGGTGGCTGCCTTGGCTCCTCTTCAGAAAGATACAGAGGTTTCTTCACATGTCTTGATGGGAATCCCGCATGGGGATGCTACTTTTGCTTCATTGTCCCCACTTGGTGAAGCATGCTCGAGAAAGGATTTGACTGCCATACATGAAGTTCTGGAAAATATTGGCTATAAAGACGATGAAGGAGTGACAAATGAGTTATCGTTCCAGGTTTGGACTGATGAAATGCAGGAAACACTTAACAGTAAGAAAAAGGGGGATGTTGCTTTCCAGCAGAAGGATTTTAGAGTTGCAATAGAGTGCTACACACAGTTCATTGATGGTGGAATAGTGGTTTCTCCAACCGTCTATGGGCGGCGAAGTTTGTGTTATCTGCTCGGCGACATGCCTCAGGAAGCGCTGAACGATGCAATGCAAGCACAAGTCATATCCCCTGTATGGCACATAGCATCATACCTTCAATTTCTTGCCCTCACTGGACTTGGTATGGAGACTGAAGCTCAAGTAGCACTTAAAGAGGGCACAGATTTGGAAGCCAAGAGAAGGGAAACTTCTGGGCATAAGTGA 1479 0.4408 MGIQCSKLMPCCANSQVKASVLEAPDTEKEDRSEASNWPAFREFSLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQIRIAVKRFNRNAWPDGRQFLEEARSVGELRNQRLANLIGCCCEGDERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVVFHLAQALEYCTERGRVLYHDLNAYRVLFDEEGNPRLSTFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPRSLVAALAPLQKDTEVSSHVLMGIPHGDATFASLSPLGEACSRKDLTAIHEVLENIGYKDDEGVTNELSFQVWTDEMQETLNSKKKGDVAFQQKDFRVAIECYTQFIDGGIVVSPTVYGRRSLCYLLGDMPQEALNDAMQAQVISPVWHIASYLQFLALTGLGMETEAQVALKEGTDLEAKRRETSGHK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1270 492 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Lele42g1270 492 SUPERFAMILY TPR-like 385 487 IPR011990 GO:0005515
Lele42g1270 492 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Lele42g1270 492 FunFam probable serine/threonine-protein kinase At4g35230 381 490 - -
Lele42g1270 492 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Lele42g1270 492 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1270 492 Gene3D Tetratricopeptide repeat domain 381 490 IPR011990 GO:0005515
Lele42g1270 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 17 486 IPR045845 GO:0004672|GO:0009742
Lele42g1270 492 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Lele42g1270 492 SUPERFAMILY Protein kinase-like (PK-like) 34 317 IPR011009 -
Lele42g1270 492 Gene3D Phosphorylase Kinase; domain 1 29 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1270 Lele-ChrLele42 24742255 24746705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1270 20 331 Glycoside Hydrolase AT3G07070 33.235 4.30e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lele42g1270 PK_Tyr_Ser-Thr 5e-27 CL0016