Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1258 ATGATTGGAGCTGAAGACAAGCATGCTCTTTCCAATCTGACAGAGATTTCCCGTAAAACGAAGCTGAAGAAGCTTACGCCATCTTCCACTCACGCCCACCGGCAACAAAAAGGTTCCCTCCCATTCTTCACTTTCATGAGATTTTCCATGATAGAAAGTCGGGCATGCTTTTGTTGTATGGCTGTGGCGAGTCCTGCGCCTGCAGTTCCACGAAGCTTCAGTTCTGTGAGGTTGCCTCAAGTTTTTGAGGTCACCGCCGGCCACATGGCCGGGATGGGAGAAATTGTAGAAGAGCCTAACACAAGTGTGGTTGATGACACTATCTATATTGCTGTGACAAAAGATTTGAAAGAGAGCAAGTCAAATCTGACATGGGCAATTCAAAACTCTGGAGGAAACAAGATTTGCATCCTCCATGTTCATGTCCCTGCAACTATGATCCCCCTGATGGGCACTAAATTTCCCGCAAGTTCATTGAATAAAGAGGAAGTTGAAGCATACAAGGAACTTGAAAGGCAAAACATGCATAAGAATCTAAATGAGTATCTTCTATCCTGTTCACGAATGGGGGTCCGGGCAGAGAAGTTGCATTTGGAAATGGAATGCATTGAGAAAGGTATTGTAGAGCTTGTCTCTCAGCATGGTATCCGTAAGCTTGTCATGGGGGCAGCAACTGATAATCGTCATTCTAGGAAAATGATGGACCTAAAATCTAAGAAAGCCATTTATGTGAGTGAACATGCTCCAGCTTATTGTCAAATACGGTTTGTCTGCAAAGGGCGCCTTATACACACTAGAAATTGCTGCTTGGATGATGGTAATGAAGAGGTTGCATCACCTTTGCCACGGCAGAGGCCAAACCCTGAAGCTGTGCTTTCCCTTCAGTTGAGGTCTCAATCTGTTACAATGGGGCAGAATACTAAGGAAAAGCTTGAGTTACTTCCCAGAGCAAGGTCTGCCATTTCTGGGCATGAAGGAAGAACGGTGACCTTTTCTTCTCCAGACGCTGAAGGGTTTTCCAGTCCAAGTACCTCAGAAGTTAGTAGTAATGGGTCAGATGGGCTGTTAAGAAAGATTCCTTCACTTTTCTCAACATGCCCTGAAAATGGTGCTATTGAAGCAGCATTGACTCCAAAATTGAATTCTGTGGGGAGTACTGAGAATGTAATAGACTCAAGTGAATTCTCTCCAGTTATAGCAAGTCTCCGCCGTTCATCTCCTCCTAGTGTACTGGATGGAGGAATAGATGACTCTCTCTACTATCAACTTGAACAAGCCATGTCTGAAGCTGAGAATGCTAGAAGGGAGGCCTTTCAAGAAACAGTTAAACGTGGGAAAGCTGAAAAAGCTGCACTTGATGCCATTTGGAGGGCTAAAGCCTCTGAAAGCTTGTATAAAGAAGTACTTAAACAAAGGAAACAAGTGGAGGAAGCACTAGAAAAAGAAAGAGGGGAACTTGAAGGGATGAAGAGCGAGAGTGACAAAGTTAAGGAAGAACTTAGACTTGCCCTAGATCAAAAGCTGTCGTTGGAGAGTCAAATTGAATCATCTGAATTCATGGTAAGGGAGTTAGAACAGAAGATTATATCTGTCGTGGATCTGTTGACAACATACAAGAAAGAAAGAGATCAGTTACAGATGCAGTGCAATAATGCACTGAAAGAGGCCGAGGAGTTGAGGAAAAAACAAGGAGAGGTTTCAAGCGTACATGGGCCTGAGGAGTCGTTTTCAGAGTTCTCTTTTCAAGAGATTGACCAAGCAACAAGGAACTTCAATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAATATATATAAAGCTACCTTGCGTCAAACCGAAGTGGCCATAAAGATGTTGCATGCAAACAACAACTCGCAAGGACCTGCAGAGTTTCAGCAGGAGGTTGATGTATTGAGTAAGTTAAGACATCCCAACCTTATTACACTCGTAGGAGCCTGCCCAGAAACCTGGACTCTTGTCTACGAGTATCTACCAAATGGAAGCCTTGAAGATCGGCTCAATTGCAAGGATAACACAGCTCCATTATCATGGCAAACTCGAATACGCATTGCTGCTGAGCTCTGCTCTGCTCTCATCTTCCTTCATTGCTGCCAACCTCACTCCATAGTTCATGGAGACTTGAAACCCTCAAATGTTCTACTTGATGCAAACTTTGTCACCAAGCTTAGTGACTTTGGAATTTGCCGTATCTTATCCAATATTGAGACTTCAGGTGATGATGATACGACAAATTGTTGGAGCACTGTTCCAAAGGGTACTTTAATCTACATGGATCCTGAATTTCTTGCTACTGGGGATCTTACGCCGAAATCAGATGTTTATTCATTTGGTATCATATTATTAAGATTGTTGACTGGGAGACCAGCGTTGGGGATCACAAAGGAAGTTCAATATGCATTAGACACTGGAAAGTTTAAATCCCTGTTGGATCCTTTGACTGGAGGCTGGCCATTTGTGCAAGCTGAACAGTTGGCTCGTGTGGCTCTAAGGTGTTGTGAGTTGACTCGGAAGAATCGGCCGGATCTTCGTTCAGATGTCTGGAAACATCTGGAATCAATGAATGCTTTTTCTGGAGGCAGAGACTCCTTTAAACTAACTTATAGAGGATCTGACCAACCTCCTTCATATTTTATTTGTCCAATCTTTCAGGAAATGATGCAAGATCCGCATATTGCAGCAGATGGATTTTCATATGAAGGTGAGGCTGTACGAGGATGGCTGGATAGTGGTCATGACACGTCACCCATGACAAATGCAAAGCTTGAACATCGTAACATTGTACCTAACCACACTCTTCGCTCTGCAATTCAGGACTGGCTCCAAAATCATCACTGA 2859 0.4358 MIGAEDKHALSNLTEISRKTKLKKLTPSSTHAHRQQKGSLPFFTFMRFSMIESRACFCCMAVASPAPAVPRSFSSVRLPQVFEVTAGHMAGMGEIVEEPNTSVVDDTIYIAVTKDLKESKSNLTWAIQNSGGNKICILHVHVPATMIPLMGTKFPASSLNKEEVEAYKELERQNMHKNLNEYLLSCSRMGVRAEKLHLEMECIEKGIVELVSQHGIRKLVMGAATDNRHSRKMMDLKSKKAIYVSEHAPAYCQIRFVCKGRLIHTRNCCLDDGNEEVASPLPRQRPNPEAVLSLQLRSQSVTMGQNTKEKLELLPRARSAISGHEGRTVTFSSPDAEGFSSPSTSEVSSNGSDGLLRKIPSLFSTCPENGAIEAALTPKLNSVGSTENVIDSSEFSPVIASLRRSSPPSVLDGGIDDSLYYQLEQAMSEAENARREAFQETVKRGKAEKAALDAIWRAKASESLYKEVLKQRKQVEEALEKERGELEGMKSESDKVKEELRLALDQKLSLESQIESSEFMVRELEQKIISVVDLLTTYKKERDQLQMQCNNALKEAEELRKKQGEVSSVHGPEESFSEFSFQEIDQATRNFNPSLKIGEGGYGNIYKATLRQTEVAIKMLHANNNSQGPAEFQQEVDVLSKLRHPNLITLVGACPETWTLVYEYLPNGSLEDRLNCKDNTAPLSWQTRIRIAAELCSALIFLHCCQPHSIVHGDLKPSNVLLDANFVTKLSDFGICRILSNIETSGDDDTTNCWSTVPKGTLIYMDPEFLATGDLTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKFKSLLDPLTGGWPFVQAEQLARVALRCCELTRKNRPDLRSDVWKHLESMNAFSGGRDSFKLTYRGSDQPPSYFICPIFQEMMQDPHIAADGFSYEGEAVRGWLDSGHDTSPMTNAKLEHRNIVPNHTLRSAIQDWLQNHH 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1258 952 FunFam receptor-like protein kinase FERONIA 553 664 - -
Lele42g1258 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Lele42g1258 952 PANTHER OS02G0152300 PROTEIN 108 946 - -
Lele42g1258 952 SUPERFAMILY Protein kinase-like (PK-like) 567 861 IPR011009 -
Lele42g1258 952 Pfam Protein kinase domain 595 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1258 952 SMART Ubox_2 884 947 IPR003613 GO:0004842|GO:0016567
Lele42g1258 952 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 879 952 IPR013083 -
Lele42g1258 952 SMART serkin_6 591 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1258 952 Gene3D Transferase(Phosphotransferase) domain 1 665 870 - -
Lele42g1258 952 Pfam U-box domain 882 951 IPR003613 GO:0004842|GO:0016567
Lele42g1258 952 SUPERFAMILY RING/U-box 878 951 - -
Lele42g1258 952 MobiDBLite consensus disorder prediction 325 352 - -
Lele42g1258 952 Gene3D Phosphorylase Kinase; domain 1 570 664 - -
Lele42g1258 952 ProSitePatterns Protein kinases ATP-binding region signature. 597 618 IPR017441 GO:0005524
Lele42g1258 952 Coils Coil 420 443 - -
Lele42g1258 952 MobiDBLite consensus disorder prediction 324 352 - -
Lele42g1258 952 Gene3D HUPs 107 250 IPR014729 -
Lele42g1258 952 CDD STK_N 107 260 - -
Lele42g1258 952 Coils Coil 535 562 - -
Lele42g1258 952 CDD RING-Ubox_WDSUB1_like 885 926 - -
Lele42g1258 952 Coils Coil 465 527 - -
Lele42g1258 952 ProSiteProfiles U-box domain profile. 880 952 IPR003613 GO:0004842|GO:0016567
Lele42g1258 952 ProSiteProfiles Protein kinase domain profile. 591 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1258 Lele-ChrLele42 24653139 24658513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1258 60 951 U-box Gene Family AT2G45910 51.454 0.0 873
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lele42g1258 Pkinase 3e-41 CL0016