Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1249 ATGTCTTCCCCTAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGCGATTACAAGGTGGAGATGATCAATGATGGAATGCAAGAGTTCTATGTGCATTTCCATGGACCTAACGACAGTCCTTATCATGGTGGTGTTTGGAAAGTAAGAGTTGAACTGCCTGATGCTTATCCCTATAAATCACCCTCCATAGGCTTTGTCAATAAGATCTATCACCCAAATGTGGATGAGATGTCAGGTTCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTTGATCTTGTTAATGTATTTGAGGTGTTTCTACCGCAACTTCTTTTGTATCCCAACCCATCTGACCCCCTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGACCGAGCTGCATTTGAACAAAGGATTAAAGAATACTGCCAGAAGTATGCGAAGCCAGAAGACATAGGAGCTGCTGCAGAAGAGAAATCGAGCAGCGATGAGGAGCTGAGCGAAGATGAATATGATTCCAGTGATGAACAGGTGGCTGGTAAAGCTGACCCTTAG 555 0.445 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRAAFEQRIKEYCQKYAKPEDIGAAAEEKSSSDEELSEDEYDSSDEQVAGKADP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1249 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lele42g1249 184 SMART ubc_7 4 148 - -
Lele42g1249 184 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Lele42g1249 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Lele42g1249 184 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Lele42g1249 184 CDD UBCc 7 143 IPR000608 -
Lele42g1249 184 MobiDBLite consensus disorder prediction 151 184 - -
Lele42g1249 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
Lele42g1249 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Lele42g1249 184 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1249 Lele-ChrLele42 24554798 24557414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1249 3 115 Miscellaneous Gene Families AT3G17000 23.967 8.37e-07 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g1249 42 24554798 24557414 Lele43g0104 43 1154368 1162704 hybridization
Lele42g1249 42 24554798 24557414 Lele44g0109 44 648518 653822 hybridization