Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1247 ATGCTTGGTAATGGGAAATCAGTTGATTTGTATAAGCTCTTTAAGGTTGTCAAGGAGAACGGTGGGTATGATGCAGTCTCCAAAAACCGTTTATGGGATCTGGTGGGTGAACAATCTGGGTTGGGTACGAGCATTGGTTCGTTTGTGCAACTGATTTACAATAAGTACTTGATTACTTTAGAGATATGGCTAAAGCAAGCTGCTGATAATAAGGTCTCTGACTGTAGTCTGGAGTTTAACAGAGTTGATTTTGGCAGGCATTTGATGGAGTTGCACGCAGAATTTGAGGGGCCCTTGTCGGATTGTAATGATGAAGAGTTGGGTGATGAGATGTGTCAACGTTCTGAGTTTAAAACTGGATATAAACGCCAGGATGGTGAGGTGTTGTTCGATGCTAAGGGAGTGAAGAGCAGGTCTGGAGGGGCCAAAAAAGTTCAGAATAGAGGATTTATTGATTTGAATATACCAGGGTTTGAGTTGAATGAACTCACAACAGCAACAACAACAACAACAACTGAATTGAATGAACTCAGTCCAAGAAATTTGTGCTTTGTAAGTGAGGTAAACAAAATGCCCATATTATCGGATGGAGGCAAGAGATGTGCCAATGATGATGATGATGTTTTGGTATTGGACCCATCTGATGTAAATGAAGAGATCTTTAATCGTAAAAGGAAGAGGGAGTCTATGCAGGGAATGCTAAGCTGGTTGACTGGCATTGCAAAGAATCCCTGTGATTCCGTTGTTGATTCGATGCCTGAAAAATCAAAGTGGAAGTCTCACAGCAATGAGAAGGTCTGGAAGCAGGTTTTGTTGTTTCGGGAGGCTGCTTTTCTGAAGCGACACGCAGAGTCAAGCAGTGAACAACTGAATTGGCAGAGACAAAAGATGCATCCATCCATGTATGAAGATCTCCTTGAGACGACATACAATCTTAGGGAGAGATGTAAGCTTACCAAGAAGCTTTTATTTGAAAAATCTAGGTCTGCAAGAGTCTCTTCAGATTCATCAATGGAAACCAAGGGTAATCTGGAGAGAACCTCTAGTCCTCACAATGAAGATTCTGCTGAGAAAAAGCTGCCTGATTCCTCTACTGCACCATCAGGTCTTGACAATTATGGCATAGTTCCCATCCCTCTGGGGCCAAGTCATCAAGCTAAAGTACCAGAATGGACTGGCATGACTTCTGAAAGTGATTCAAAGTGGTTGGGGACCCGGATATGGCCGTCAGAGAAAGTGAATCACAGACTCCTGATTGAGAGGGACCCCATTGGCAAGGGAAGACAGGATTCATGTGGCTGCCAAGTACCCGGTTCTGTTGAATGTGTCAGATTTCATGTTGCTGAGAAAAGGGCTAAGGTGAAGCTGGAATTAGGTGTGGCTTTTTACCTGTGGAATTTAGATAAGGTAGGTGAAGATGTTAGGCAATCGTGGACAGTGGATGAAGAGAAGAAGTTTAAGGATGTGGTGCGATCAAATCCTCCATCACTAGAGAGATACTATTGGGATCATATTTTTAAGTCATTTCCGAAGAAGACCAGAGAAGATTTAGTTAGCTACTATTTCAATGTCTTCCTTTTGCAGCGCCGAGCATATCAGAACAGGAATACTCCAAATGAAATTGATAGTGATGATGAAGAATCAGAATTTGGACCTTTGAGGAATGCTTTTGGACAGCAAGCACAGAAGCCAACCAGTTCCATCTTGCTAACCCCCAAAAAGTCTCAGACAAAGAACAAATAG 1743 0.4251 MLGNGKSVDLYKLFKVVKENGGYDAVSKNRLWDLVGEQSGLGTSIGSFVQLIYNKYLITLEIWLKQAADNKVSDCSLEFNRVDFGRHLMELHAEFEGPLSDCNDEELGDEMCQRSEFKTGYKRQDGEVLFDAKGVKSRSGGAKKVQNRGFIDLNIPGFELNELTTATTTTTTELNELSPRNLCFVSEVNKMPILSDGGKRCANDDDDVLVLDPSDVNEEIFNRKRKRESMQGMLSWLTGIAKNPCDSVVDSMPEKSKWKSHSNEKVWKQVLLFREAAFLKRHAESSSEQLNWQRQKMHPSMYEDLLETTYNLRERCKLTKKLLFEKSRSARVSSDSSMETKGNLERTSSPHNEDSAEKKLPDSSTAPSGLDNYGIVPIPLGPSHQAKVPEWTGMTSESDSKWLGTRIWPSEKVNHRLLIERDPIGKGRQDSCGCQVPGSVECVRFHVAEKRAKVKLELGVAFYLWNLDKVGEDVRQSWTVDEEKKFKDVVRSNPPSLERYYWDHIFKSFPKKTREDLVSYYFNVFLLQRRAYQNRNTPNEIDSDDEESEFGPLRNAFGQQAQKPTSSILLTPKKSQTKNK 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1247 580 SMART ELM2_2 378 429 IPR000949 -
Lele42g1247 580 MobiDBLite consensus disorder prediction 346 360 - -
Lele42g1247 580 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Lele42g1247 580 MobiDBLite consensus disorder prediction 329 345 - -
Lele42g1247 580 SMART sant 474 527 IPR001005 -
Lele42g1247 580 SMART bright_3 2 66 IPR001606 GO:0003677
Lele42g1247 580 MobiDBLite consensus disorder prediction 536 580 - -
Lele42g1247 580 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Lele42g1247 580 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 577 - -
Lele42g1247 580 CDD SANT 477 525 IPR001005 -
Lele42g1247 580 MobiDBLite consensus disorder prediction 329 376 - -
Lele42g1247 580 CDD ARID 4 61 - -
Lele42g1247 580 Gene3D - 1 75 IPR036431 GO:0003677
Lele42g1247 580 MobiDBLite consensus disorder prediction 558 580 - -
Lele42g1247 580 Pfam Myb-like DNA-binding domain 475 524 IPR001005 -
Lele42g1247 580 SUPERFAMILY ARID-like 4 75 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1247 Lele-ChrLele42 24546995 24550552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele42g1247 ARID 4.1e-09 CL0123