Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1246 ATGTCTCTTCTCACTTCTCCTTCCTCTTCCTTCGTCGTACCCTTCACTTTTTTCTTCTACCTACTCGCCTTTTCCTCTTCTCAAGCAAATTCTTCCGGCGGAGGGAGGAACCTGCAAGAGAACCGTGTTCTGTTGAGAGGAAACGAGACCTTACCCAGTGAGAATTGGACATTCGAGCTTGGCTTCTTCAGCTTCAATGGCGGAGAACCCAATTATTACTTGGCGATTCGGTACGCGTCCGTTCCGCTTCCCACCTACGTCTGGGTCGCGAATCGCGAAAAACCCAGCAAAAATCTCGCCGATTTGACGCTGGAAATCACTGAAACTGGCCTCCTCTTTGTGAAAGATTCACCAACCTCGATTCTTTGGCAGAGTACGGATATAGAAGCTTCAGGAGCAGAAGAATTAAAGCTTTTAGACAGTGGGAATTTGGTTCTGCTCACTCTTCAAGGCTCTGTTTCATGGCAGAGCTTCGATTTCCCCACGGACGCTTGGCTTCCGGGTATGAATCTGACCCGAACCCGATCCTTGTTGTCGTGGCGGAGCCCCACGGACCCGTCGCCGGGACTCTATTCTCTGCGGCTGAGACCGCCGGGATACGGTGAGTTCGAGCTCCTCTTCAATAACTCCATATCTTATTGGACCACCGGAAGGTGGACCGGCTACTCATTCCTCAACATTCCGGAGATGATGATTCCGTACCTCTATCTCTTCGACTTCGCGAATCCATTCACACCAACGGCATCGTTTGGGTTCCGGGAGAAGCCTCTGAACGGGCTGAGCCCGCCCACATATTTCCGCGTCGAACCGTATGGGCAGGTCCGACAGTACACGTGGTGGTCTCAGGCCGGAAGCTGGAACATGTTCTGGTCGGGGCCGAAAAATGTGTGTGACGTTCATGGCCTGTGTGGTAGCTTTGGAGTCTGCAATGGCGAAACGTCGCCGAAGTGCGAGTGCGTCTCCGGTTACAAGCCCTTAGACGACGGTAGATGGGCTTCCGGAGACTACTCCGGTGGGTGCCGTCGGGAAACCGACAGTCCCTGCGATAAAAGTGATGGGTTCGAGGATATGGGCGTTATGAGCTTCGTAGCACCCAATGTGCGGTCGTTTCAGACCAAGTCTCGAAGCAATTGTGAGACTAATTGTTTGAGTTCATGCGACTGTATTGGTTTATCTTTCAACCAAGCCAACCAAAGGACCAGTTCCTGCCAGAACTTTTACGGGTCAATTCTGAATCTCCACAATTCATCTTCTGAAACCTCTGTTCATGGCAATTTGTATGTTAGGGTACAACGAGGAGAATCTATGAAGAAACCGGATCGTCGAATTCTGACCGGCACTATCATTGGGGCGATTGCTTTTCTTGGGTTAATAGTGGCGACATTTTTGGTATTTCTGAATCGAAGGCAGAAGAAGAATAAACTAGAAGAAGATGGATTGATTCCTGTTCTGAATCTACAGTTATTTTCCTACAAAGAGCTTCAATTAGCGACTCGGGGATTCTCAGAGAAGGTGGGTCATGGTGGGTTTGGGACAGTATTTCAAGGAGAATTACCAGATTCAACTCTCGTAGCCGTGAAGCGACTCGAGAGACCAGGTGGTGGAGAAAAGGAATTCAGAGCAGAAGTTTCCACCATTGGTAATATCCAACATGTTAATCTCGTTAGACTCAGAGGGTTTTGCTCAGAAAATTCTCACAGACTTCTGGTTTACGAGTTCATGCCCAACGGTGCTCTGAGTTCTTACCTTCGCAAAGAAGGAGGGCCTAGTCTGAGTTGGGATGTTAGGTTTCGAATAGCCGTAGGAACAGCCAAAGGCATAGCTTACTTGCACGAAGAATGTCGAGATTGTATCCTTCACTGTGATATCAAACCTGAAAACATCCTCTTGGACACCAATTTCACGGCCAAAGTCTCTGACTTTGGATTAGCCAAGCTCATGGGGAGGGATTTCAGTAGGGTTTTAGCAACCATGAGAGGCACTTGGGGGTATGTAGCACCAGAGTGGATTTCTGGCGTAGCAATCACCACAAAAGCTGATGTTTACAGCTACGGGATGACATTGTTAGAGCTGATCAGTGGTCGCCGAAATGTAGAGGCACCGCCACAATCAGGTGGTGGCACCGAGGAGGCTGGAGAGAAAGAGAAATGGTTCTTCCCTCCGTGGGCTGCACGGCAGATAATTGAAGGGAATTGGACTGCAATACTTGACAAGAGGCTTGGGAATGCTTATAACATGGAGGAGGTAAAAAGGGTGGCTATGGTGGCTGTGTGGTGCATTCAGGATGATGAAGGAAGTAGGCCTGCCATGGGGATGGTGGTGAAGATGTTGGAGGGGTTAGTGGAAGTAAGTGTCCCTCCGACGCCTAAACTGCTTCAAGCATTGGTCTCCGGTGAGTCCTTTCCAGGTGTAAAGGCAGATTACTGCACAGGCAGCAGTATCTCCGGTGGCAATGCTGATTCAGAATCATTCACAGGGGGTGTTTCTTCCCCAGCAAATATGAATGTCAATGTTGTTGTACAATGA 2526 0.4925 MSLLTSPSSSFVVPFTFFFYLLAFSSSQANSSGGGRNLQENRVLLRGNETLPSENWTFELGFFSFNGGEPNYYLAIRYASVPLPTYVWVANREKPSKNLADLTLEITETGLLFVKDSPTSILWQSTDIEASGAEELKLLDSGNLVLLTLQGSVSWQSFDFPTDAWLPGMNLTRTRSLLSWRSPTDPSPGLYSLRLRPPGYGEFELLFNNSISYWTTGRWTGYSFLNIPEMMIPYLYLFDFANPFTPTASFGFREKPLNGLSPPTYFRVEPYGQVRQYTWWSQAGSWNMFWSGPKNVCDVHGLCGSFGVCNGETSPKCECVSGYKPLDDGRWASGDYSGGCRRETDSPCDKSDGFEDMGVMSFVAPNVRSFQTKSRSNCETNCLSSCDCIGLSFNQANQRTSSCQNFYGSILNLHNSSSETSVHGNLYVRVQRGESMKKPDRRILTGTIIGAIAFLGLIVATFLVFLNRRQKKNKLEEDGLIPVLNLQLFSYKELQLATRGFSEKVGHGGFGTVFQGELPDSTLVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEFMPNGALSSYLRKEGGPSLSWDVRFRIAVGTAKGIAYLHEECRDCILHCDIKPENILLDTNFTAKVSDFGLAKLMGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLLELISGRRNVEAPPQSGGGTEEAGEKEKWFFPPWAARQIIEGNWTAILDKRLGNAYNMEEVKRVAMVAVWCIQDDEGSRPAMGMVVKMLEGLVEVSVPPTPKLLQALVSGESFPGVKADYCTGSSISGGNADSESFTGGVSSPANMNVNVVVQ 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1246 841 ProSiteProfiles Bulb-type lectin domain profile. 36 159 IPR001480 -
Lele42g1246 841 ProSiteProfiles PAN/Apple domain profile. 348 431 IPR003609 -
Lele42g1246 841 SMART serkin_6 499 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1246 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 219 IPR036426 -
Lele42g1246 841 Gene3D - 34 158 IPR036426 -
Lele42g1246 841 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Lele42g1246 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Lele42g1246 841 SMART blect_4 42 161 IPR001480 -
Lele42g1246 841 Pfam S-locus glycoprotein domain 214 325 IPR000858 GO:0048544
Lele42g1246 841 PANTHER OS07G0415500 PROTEIN 9 790 - -
Lele42g1246 841 Gene3D Phosphorylase Kinase; domain 1 464 573 - -
Lele42g1246 841 ProSiteProfiles Protein kinase domain profile. 499 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1246 841 CDD B_lectin 42 161 IPR001480 -
Lele42g1246 841 SUPERFAMILY Protein kinase-like (PK-like) 482 778 IPR011009 -
Lele42g1246 841 Pfam Protein kinase domain 502 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g1246 841 CDD STKc_IRAK 505 780 - -
Lele42g1246 841 PIRSF SRK 6 829 IPR024171 GO:0004674
Lele42g1246 841 FunFam Receptor-like protein kinase 4 463 573 - -
Lele42g1246 841 Gene3D Transferase(Phosphotransferase) domain 1 574 785 - -
Lele42g1246 841 Pfam D-mannose binding lectin 85 175 IPR001480 -
Lele42g1246 841 FunFam S-receptor-like kinase 5 574 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1246 Lele-ChrLele42 24534032 24536557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1246 489 787 Receptor kinase-like Gene Family AT5G20050 46.624 1.59e-77 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lele42g1246 Pkinase 2.6e-45 CL0016