Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1245 ATGGGAGGTTGCTGCTGCAGTGCCAGAAAACCTCATCTGCATGGAACGCCAGTTTATATCTATTGTCCACCGGCTTTGGAAGAGCATGAATCTTTAACTACTAATGCTGGTACTGCTGGTTCACTCACTGCCGGATTGTTGGTGGGTTTGGACCTTCAGGGGTCAACACCTGATACTTTCCGTCCCCCTCCTGCACCATTGCCATATGATACGGTTTTGGGTTGTCCAGCATCAACTGATTCTGAGTCAGGTAGAGAAACAGTTAGTGTCAGTAGTTTTGCAACTTTAATTACATGTGAAGATATCGAAGACTCAGAATGCAAAGTTCAAGCTAATTCTATGCCTACGTCTCCAAGGAAGCCAGAATTAACAAAATCAAATGAATCTCATGTATTAGTGACAGAGGAAGAGGATGGTTGCCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACCAAGTGTGAACACCACTTTCACCTATCTTGCATTCTTGAGTGGATGGAACGAAGTGACTCTTGTCCCATATGCGATCAGGAGATGATATTTGACCAGACACTGAATTAG 576 0.4323 MGGCCCSARKPHLHGTPVYIYCPPALEEHESLTTNAGTAGSLTAGLLVGLDLQGSTPDTFRPPPAPLPYDTVLGCPASTDSESGRETVSVSSFATLITCEDIEDSECKVQANSMPTSPRKPELTKSNESHVLVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1245 191 SUPERFAMILY RING/U-box 134 187 - -
Lele42g1245 191 MobiDBLite consensus disorder prediction 111 131 - -
Lele42g1245 191 SMART ring_2 140 180 IPR001841 -
Lele42g1245 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lele42g1245 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 190 IPR013083 -
Lele42g1245 191 Pfam Ring finger domain 140 180 IPR001841 -
Lele42g1245 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 188 - -
Lele42g1245 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1245 Lele-ChrLele42 24527013 24529193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1245 1 191 C3H Transcription Factor Family AT4G00335 59.162 1.50e-76 226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g1245 42 24527013 24529193 Lele43g0105 43 1164286 1166445 hybridization
Lele42g1245 42 24527013 24529193 Lele44g0111 44 665241 667437 hybridization