Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1239 ATGGGCTTTCCGGTGGGATACACCGACGTCGTTTTACCAAATCTCTTCCTCCACACACTCTCGCTCCTCGGATTCATCCGCAACCTCATCTTCCTCCTCTTCCACTTTCTCGGCCTCTCCGATTTCCTCGAAACGGAGGTCGTCTGGTCCGAATCTCACGCTCGATTGCCCGACAGCCCCCCGGTGTCCGCGCTCCTGATCCGAGAATTCCTCCCTGTCGTCAAGTTTGGCGAGCTCCTCGCCGCTGCCGCCGCCAGCGACACGCCGGAGAGTTGTGCCGTCTGCCTGTACGAGTTCGAGACGGAGGAGGAAATCCGGTGCTTGACCAATTGCAAGCACATTTTTCACCGGGCTTGTCTGGACCGTTGGATGGATCACGATCAGAAGACTTGTCCCTTGTGTAGGACCCCCTTTGTGCCTGATGATATGCAGGATGATTTCAATGAACGGCTCTGGGCCGCTTCTGGAGTCTCTGATGTTTATGGAGACTACACTTCCCTGTGA 504 0.5615 MGFPVGYTDVVLPNLFLHTLSLLGFIRNLIFLLFHFLGLSDFLETEVVWSESHARLPDSPPVSALLIREFLPVVKFGELLAAAAASDTPESCAVCLYEFETEEEIRCLTNCKHIFHRACLDRWMDHDQKTCPLCRTPFVPDDMQDDFNERLWAASGVSDVYGDYTSL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1239 167 CDD RING-H2 92 135 - -
Lele42g1239 167 FunFam RING-H2 finger protein ATL73 67 142 - -
Lele42g1239 167 SUPERFAMILY RING/U-box 91 141 - -
Lele42g1239 167 SMART ring_2 92 134 IPR001841 -
Lele42g1239 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 143 IPR013083 -
Lele42g1239 167 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
Lele42g1239 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 20 154 - -
Lele42g1239 167 Pfam Ring finger domain 91 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1239 Lele-ChrLele42 24480858 24481361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1239 1 166 C3H Transcription Factor Family AT1G63840 51.136 5.65e-54 167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g1239 42 24480858 24481361 Lele43g0112 43 1209038 1209541 hybridization
Lele42g1239 42 24480858 24481361 Lele44g0117 44 714296 714799 hybridization