Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1220 ATGAATACCGGCCTTACCGGTCTCAATCACCCTCCTCTGCCGCCCCCGACGGCGACTCCGGCCGCGGATGATCCGAACAAGAAGATCCGAAAACCGTATACGATTACTAAGTCCAGAGAGAACTGGTCCGAGCAGGAGCACGACAAGTTTCTCGAAGCTCTCCAATTGTTCGACCGTGATTGGAAGAAGATTGAAGCATTTGTCGGGTCAAAAACTGTTATCCAGATAAGAAGTCATGCGCAGAAGTATTTTCTAAAAGTTCAGAAGAATGGGACTAGTGAACACGTGCCTGCTCCGCGGCCGAAGAGAAAAGCTGCTCATCCTTATCCACAAAAGGCCCCTAAAAATGCTGCATTGGTATCTCAAGGCACCGGACCAATGCAATCTTCAACCGCTTTCTCTGAGCCAGCATGCATTTATAGGCCAGATTCATTGTCCGTGCTCGGAACACCGGTTACCAGTGTGCCTTTGTCATCCTGGAATTGCAAGGCGATGCCGTTTGTCAGCATGCCACAAGTGGCTAAAGATGATATGGGATTGGTCGGACAAGCCGTTCCTCGTAATTGTTGCTATAGCAGTAGCAATGAGAGCGCTCCTGGAGTTTGGCCCAATAATAGAAGTATAGAACAAGTGGACCAAGTAATGCCAGATTTTTCACAAATCTATCGGTTCATCGGTAGTGTGTTTGATCCAAATGCAACTGATCATCTACAGACACTGAAAAAGATGGACCCAATAAATGTGGAAACAGTATTGTTGTTGATGAGAAACCTCTCCATCAATTTAACGAGTCCTAAGTTTAAGGATCATCAGAAGCTGCTTTCGTCGTATGATGTGGACCCGGGTAAGGTGAAGACCGGTGGTCTTTACAATGATCCACTGACTAACAAATCCGAAAGTGCTGTTCTGTCTGCTTAG 918 0.4673 MNTGLTGLNHPPLPPPTATPAADDPNKKIRKPYTITKSRENWSEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPAPRPKRKAAHPYPQKAPKNAALVSQGTGPMQSSTAFSEPACIYRPDSLSVLGTPVTSVPLSSWNCKAMPFVSMPQVAKDDMGLVGQAVPRNCCYSSSNESAPGVWPNNRSIEQVDQVMPDFSQIYRFIGSVFDPNATDHLQTLKKMDPINVETVLLLMRNLSINLTSPKFKDHQKLLSSYDVDPGKVKTGGLYNDPLTNKSESAVLSA 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1220 305 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Lele42g1220 305 Pfam Myb-like DNA-binding domain 39 84 IPR001005 -
Lele42g1220 305 Gene3D - 41 89 - -
Lele42g1220 305 SMART sant 38 86 IPR001005 -
Lele42g1220 305 MobiDBLite consensus disorder prediction 1 29 - -
Lele42g1220 305 MobiDBLite consensus disorder prediction 91 115 - -
Lele42g1220 305 FunFam protein REVEILLE 6 isoform X1 41 89 - -
Lele42g1220 305 PANTHER SWI/SNF COMPLEX-RELATED 19 263 - -
Lele42g1220 305 ProSiteProfiles Myb-like domain profile. 34 84 IPR001005 -
Lele42g1220 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 88 IPR017930 -
Lele42g1220 305 ProSiteProfiles SANT domain profile. 37 90 IPR017884 -
Lele42g1220 305 CDD SANT 41 84 IPR001005 -
Lele42g1220 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 37 86 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1220 Lele-ChrLele42 24368972 24371295 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele42g1220 Myb_DNA-binding 6.8e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g1220 42 24368972 24371295 Lele43g0130 43 1323886 1327413 hybridization
Lele42g1220 42 24368972 24371295 Lele44g0136 44 830054 833729 hybridization