Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1212 ATGGGCGATTGTGATGATGTAGGGGACTTCGCTGGAACCATTTGCTCAATCTGCTACGAAGCTCTCAAGCCCATTGTCGAAGACCTCCGATCCATCAATATCTGCGGTCATCAATGGTTCGAGTACTGTTCAACGGCAAAGAAATGCACTTGCCCTGTGTGCAAGCAGAGTTGTAAAGCGAGCGATGTTGCTCGGTTGTATTTCCAGTCTCTCGGAGACGTGAAGGATGCTGTTCTTCCCGAGAAATCCGTTGGGTCTGGGGAGGAAGATGCGGGGGTTTTTCGTAGAGAAGTGAAAGTGTTGGAATTGAAAGTTTCGGGGCTTAGTTCAAAATTGGAGCAACAGGAGCAGAAATTGGGAGATGTTACTAATGAGCTTTATGCTTGCAAGGAACAGGCAAAATTAGATGCAGAACTGAAAAACGAAGCGTTGAAACAACCAGCATTCATACAAAATCAGCTTCTTATGAAATCAGAGGAGCTTGAAAAGTCAACTTTAGAGTGTTCGAGATTACAAGATAGAAATATGGCACTGGCTCAAGAACTCGCAGCATTCAAATTTAAAGATACGAATGACACATTACGAAGATCTTTGGTCATGCGAAACAGCTTATGCCGTGCCCCCGAAGATAGCCTGAAATTGCGTTGTCTTAATAGGAGTTACAAAGAATTAATGACCAAGTGCAATATTCTGGGAAGAGGGGAGGCACGTTATAGTAGAAAGCTTGAGAAGGCAAGAGAAAATCAAGAAACTGAAGAACTGGAAACAGCGGCTGAAGTAAAAGAGAATGAAATCCTAAGGTCTCTGAAATTTTCAAAGAAAACAGGTTGCTTAAAGAATCTTGAAAGCAATAGCAGTTATAATTCTGATCTATTGTCAGCAGATAAAATTTCATCAAAAGAACATGGGAAGCAAATTCTGACACCCCATTCCAGAACAGATCTCTTTGTGAACGTCAATAATAAAGTGTTGAAATCTGCAAAGATGGAGAACATCGACGGTAAGGAAAGTAGAGAAAATAAAGCTGTAAATTTCAGCAAGGAAAGTTCATCTAGGATGTCTCTTAATGGCGAGGAAAATTACATCTGTCTTGATAAAGACGATCCAGAATTTACTAAAGCTTGGCCAGGATTTGCAAAATACAACTGTAAAGACCAAGGCAGTGATACTGTTGCTCTTAGGAAGCCCATTCTAGCAAAGCCAGAGGCAGCTTCTAGCGTAGAGAGAGAAACAGCAATGCAAGAATACAACCTGGGCACCTGGCTGAGCCTTTAA 1275 0.4173 MGDCDDVGDFAGTICSICYEALKPIVEDLRSINICGHQWFEYCSTAKKCTCPVCKQSCKASDVARLYFQSLGDVKDAVLPEKSVGSGEEDAGVFRREVKVLELKVSGLSSKLEQQEQKLGDVTNELYACKEQAKLDAELKNEALKQPAFIQNQLLMKSEELEKSTLECSRLQDRNMALAQELAAFKFKDTNDTLRRSLVMRNSLCRAPEDSLKLRCLNRSYKELMTKCNILGRGEARYSRKLEKARENQETEELETAAEVKENEILRSLKFSKKTGCLKNLESNSSYNSDLLSADKISSKEHGKQILTPHSRTDLFVNVNNKVLKSAKMENIDGKESRENKAVNFSKESSSRMSLNGEENYICLDKDDPEFTKAWPGFAKYNCKDQGSDTVALRKPILAKPEAASSVERETAMQEYNLGTWLSL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1212 424 Coils Coil 161 181 - -
Lele42g1212 424 Coils Coil 98 132 - -
Lele42g1212 424 ProSiteProfiles Zinc finger RING-type profile. 15 55 IPR001841 -
Lele42g1212 424 Coils Coil 235 264 - -
Lele42g1212 424 SUPERFAMILY RING/U-box 12 65 - -
Lele42g1212 424 PANTHER RING ZINC FINGER PROTEIN-RELATED 7 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1212 Lele-ChrLele42 24299167 24301713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1212 11 295 C3H Transcription Factor Family AT4G01270 43.689 7.22e-63 209