Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1201 ATGTCCTCCTCCTCCACCGCCACCTCCTTCCTCTCCAACATCGGCCTCGGCTACTCCATCGCCGTCGCCATCGCCCTCCTCTTTCTCCTCTCCACCCTCCTCCTCTCTTCCTACCTCTGCTGCCGATCTAACTCTCCCCCGCCTCCCCCTCCCGCCGACGGCATCATTCTCCCCCGCATCATCTTCGTCGCCGATGACGACGACAACCGTGATGAAAACTCCATCGCCCTCGGCCTCGCCCCTAATGTGATCAACTCCTACCCGAGGTTCTCCTACACCAAGGACGACGCTAATCTCGCCTCCGCCCCCGCTGCCGATCACAATATCACGTGCTCCATCTGTTTGTGCGAGTACAAGGACTACGAGATGCTGAGGATGATGCCGGAGTGCCACCATTTCTTCCACCTTGTCTGCCTCGATGCATGGCTCAAGCTAAACGGCTCCTGCCCCGTCTGTCGAAACTCCCCGCTTCCTACTCCGATCTCGACGCCGTTGCAGGAGGTGGTGCCTCTCTCTCAGTACGCCGCTGATCGGAGGCGGAGCAGTTGA 549 0.6011 MSSSSTATSFLSNIGLGYSIAVAIALLFLLSTLLLSSYLCCRSNSPPPPPPADGIILPRIIFVADDDDNRDENSIALGLAPNVINSYPRFSYTKDDANLASAPAADHNITCSICLCEYKDYEMLRMMPECHHFFHLVCLDAWLKLNGSCPVCRNSPLPTPISTPLQEVVPLSQYAADRRRSS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1201 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 157 IPR013083 -
Lele42g1201 182 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lele42g1201 182 SMART ring_2 111 152 IPR001841 -
Lele42g1201 182 CDD RING-H2_PA-TM-RING 110 153 - -
Lele42g1201 182 Pfam Ring finger domain 110 153 IPR001841 -
Lele42g1201 182 PANTHER RING-H2 FINGER PROTEIN ATL67 3 181 IPR044289 GO:0016567|GO:0016740
Lele42g1201 182 SUPERFAMILY RING/U-box 110 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1201 Lele-ChrLele42 24226659 24227207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g1201 15 173 C3H Transcription Factor Family AT5G06490 36.471 5.04e-35 120